Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3799 ATGGACATGGCGGCGCCGATTTCCGCACCACCGATGGTTCAGCCCAATGGTCCTCCGACGCCGGTGTCGCCTGCGGCAGCGGCATTGACTGCGGGGCCGTTTGCAAATATGTCATTGTACGTCGGTGATCTTCACCCGGATGTGGATGAACGGCAGCTCCTTGATCTGTTCAGCCAAGTGGCGACTGTTGTCTCCACCAGGGTTTGCAGAGATCAGACTAGGCAATGCTCTCTCGGTTACGGCTACGTCAACTTTGGCACCGCCCAGGATGCGGCTAATGCCATAGAACTTCTGAATTTTACCCCAGTGAATGGAAAACCCATTCGGATCATGTTTTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATATGCAAATGTGTTTATTAAGAACTTGGACACATCAATAGATAACAAGGCATTACATGAAACTTTTTCTTCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACCCCTTTGGCCAGTCAAAAGGGTATGGTTTCGTACAGTATGACAACGAAGAATCTGCGCAAAATGCCATCAAACAGCTGAATGGGATGTTGTTAAATGATAAACAAGTCTATGTTGGACTTTTTGTTCGGCGCATGGAAAGGGCTCGTGCAAATGGATTGCCAAAGTTCACTAATGTTTATGTGAAAAATTTCTCTGAAAATTGTACTGAGGAAGACCTCAAACAGCTTTTTGGGTCATATGGCACAATAACTAGTGCAGTTGTCATGAAAGATGCAAATGGCAAGTCTCGATGTTTTGGCTTTGTTAATTTCCAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTATCAATGGTGACAAGGTATTATATGTAGGGAGAGCTCAGAAGAAAGTAGAAAGAGAGGCAGAGTTGAAGACCAAGTTTGAGCAAGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAACCTGTACATGAAAAATCTCGATGATAGCATCGATGATGAAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGCTTGATTCACAAGGGCATAGCAAGGGTTCTGGTTTTGTGGCTTTTTCTACACCTGAGGATGCAAGTAAAGCGTTGAATGAAATGAATGGGAAAATGGTAGCCGGAAAACCTCTTTATGTTGCCGTGGCCCAGCGGAAAGAAGAAAGGAAGGCCTTGCAGGCTCATTATGCTCAATTCCGTGCACCTAGTAGGATGGGGCCTCTGCCTAGTGGAATTCCTGGATATCATCCTGGGGCACCTAGATTTGCCCCCCAGCAGTTGTACTATGGTCAGGGAACACCTGGTATGATACCACCTCAGCCATCCGGATTTGGTTTCCAGCCGCAAATATTGCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAGCTTCAGAGACAAGTTCAGCCTGGGCAAAGGATGGGTGTTCGACGTGGTGGAAACTTCCAACATATGCAGCAGAGCCAGATGCTGCAACGGAATTCCAATCAAGGGTTTAGATATATGGGCAACAATCGAAACGGCATAGACCCATCTATGGTTCAACAAGGCCTGGTGAATCCAATGATGCCTTTACCCTTTGATGGTTCTGGGATTACTCCAGCTCCAGTTGATAATCTGCGACCTGGTTCGCTTTCTACAACGCTTGCCTCAGCTTTGGCCTCTGCTTCACCAGAGAATCAGCGCATGATGCTGGGTGAACAATTATATCCCCTCGTAGAGCGTCTTGCGCCAAGCCATACGGCAAAAGTGACGGGGATGTTGCTGGAAATGGACCAATCCGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAATAAAGGTTTCTGAGGCAATGCAAGTCCTGCATGAAGCTGCATCGGGCACTGAAGTTGGCGAACAGCTTAGCTCACTGTCCTTGAATGAATGA 1962 0.4628 MDMAAPISAPPMVQPNGPPTPVSPAAAALTAGPFANMSLYVGDLHPDVDERQLLDLFSQVATVVSTRVCRDQTRQCSLGYGYVNFGTAQDAANAIELLNFTPVNGKPIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHETFSSFGTVLSCKVAVDPFGQSKGYGFVQYDNEESAQNAIKQLNGMLLNDKQVYVGLFVRRMERARANGLPKFTNVYVKNFSENCTEEDLKQLFGSYGTITSAVVMKDANGKSRCFGFVNFQSPESAAAAVERLNGTTINGDKVLYVGRAQKKVEREAELKTKFEQERISRYEKLQGANLYMKNLDDSIDDEKLKELFSEFGTITSCKVMLDSQGHSKGSGFVAFSTPEDASKALNEMNGKMVAGKPLYVAVAQRKEERKALQAHYAQFRAPSRMGPLPSGIPGYHPGAPRFAPQQLYYGQGTPGMIPPQPSGFGFQPQILPGMRPGVAPNFIMPYQLQRQVQPGQRMGVRRGGNFQHMQQSQMLQRNSNQGFRYMGNNRNGIDPSMVQQGLVNPMMPLPFDGSGITPAPVDNLRPGSLSTTLASALASASPENQRMMLGEQLYPLVERLAPSHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGTEVGEQLSSLSLNE 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3799 653 CDD RRM2_I_PABPs 123 198 IPR045305 -
Alju02g3799 653 SUPERFAMILY PABC (PABP) domain 500 637 IPR036053 GO:0003723
Alju02g3799 653 FunFam Polyadenylate-binding protein 206 302 - -
Alju02g3799 653 FunFam Polyadenylate-binding protein 126 199 - -
Alju02g3799 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723
Alju02g3799 653 SUPERFAMILY RNA-binding domain, RBD 316 422 IPR035979 GO:0003676
Alju02g3799 653 FunFam Polyadenylate-binding protein 558 639 - -
Alju02g3799 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Alju02g3799 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Alju02g3799 653 SMART poly_2 573 636 IPR002004 GO:0003723
Alju02g3799 653 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g3799 653 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 633 IPR006515 GO:0003723
Alju02g3799 653 CDD RRM4_I_PABPs 319 397 - -
Alju02g3799 653 SUPERFAMILY RNA-binding domain, RBD 213 301 IPR035979 GO:0003676
Alju02g3799 653 SMART rrm2_1 126 198 IPR003954 GO:0003676
Alju02g3799 653 SMART rrm2_1 321 393 IPR003954 GO:0003676
Alju02g3799 653 SMART rrm2_1 38 111 IPR003954 GO:0003676
Alju02g3799 653 SMART rrm2_1 217 289 IPR003954 GO:0003676
Alju02g3799 653 Gene3D - 560 638 - -
Alju02g3799 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Alju02g3799 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 390 IPR000504 GO:0003723
Alju02g3799 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Alju02g3799 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 285 IPR000504 GO:0003723
Alju02g3799 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Alju02g3799 653 PANTHER RNA BINDING PROTEIN 36 99 - -
Alju02g3799 653 FunFam Polyadenylate-binding protein 303 407 - -
Alju02g3799 653 SUPERFAMILY RNA-binding domain, RBD 37 202 IPR035979 GO:0003676
Alju02g3799 653 SMART rrm1_1 38 111 IPR000504 GO:0003723
Alju02g3799 653 SMART rrm1_1 217 290 IPR000504 GO:0003723
Alju02g3799 653 SMART rrm1_1 321 393 IPR000504 GO:0003723
Alju02g3799 653 SMART rrm1_1 126 198 IPR000504 GO:0003723
Alju02g3799 653 CDD RRM3_I_PABPs 215 295 - -
Alju02g3799 653 Gene3D - 305 410 IPR012677 -
Alju02g3799 653 Gene3D - 204 304 IPR012677 -
Alju02g3799 653 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Alju02g3799 653 Gene3D - 33 119 IPR012677 -
Alju02g3799 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Alju02g3799 653 Gene3D - 124 199 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3799 Alju-ChrAlju02 56980089 56983199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3799 36 642 Eukaryotic Initiation Factors Gene Family AT1G71770 59.194 0.0 705