LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g3753	ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTTTTGATTTAAGGCTTCAGGGCCATCACAGGGGAAAGTCACATAGTTCAGTCCATGAGGTGCCAGCACAACCTCCGGTGATACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTCCTTCATGATGTTATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCTGCCCGTAAGCATGTGGTTGCATGCGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAATCCAGAGTTCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCCGGGCCTCGGGATGGAATGATGCAGTGTTTCATCAAGCGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGCTTAAGCCCTGCCTTGCTTGTTGAGAATGGGAAGTTTCTTCTCTCTGCCAAACGGACTAGACGAACCACTTGCACTGAGTATATTATATCCATGGATGCTGAAACCATATCAAGATCTAGCAGCACTTATATTGGGAAACTAAGGTCAAATTTTCTGGGCACCAAATTCCTAATATATGATACACAACCTCCCCATAATTATGCTCAGTTGCCTCCTCCTCAACCTAGCCAAAGCCGTCGATTCTATTCTAAAAAGGTGTCGCCGAAAGTCCCTAGTGGCAGCTACAACATTGCTCAGGTCACCTATGAGCTGAACGTGCTCGGTACAAGAGGCCCACGGAAGATGAACTGCACCATGTGCTCAATCCCAGAATCATCCCTGGAGCCTGGTGGCACTGTCCCAGGCCATCCAGAGCTCCTCCCCCACGCCCTGGAGGACTCATTCCGGAGCACATCCTTTTCGAAATCAATCCACAGTTCGTCCAATTTTAGCAGCTCTAGGTTCTCAGACATCATGTGGACCGGCAACGAAGAAGAGGGCAGTGGCGGGGTAAAAGAGAGGCCGCTGATTCTCAAAAACAAGTCTCCAAGATGGCATGAGCAGTTGCAGTGTTGGTGCCTCAACTTTCGGGGCAGAGTGACAGTGGCCTCAGTCAAGAATTTCCAGCTGATCGCTGCTGTGCAGCCTCAGCCTGCAGCCGGTGCTCCAACAACACCGGCACAGCCTGGCCCGGCAGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTGGGCAAGGATATGTTCACCATGGACTATCGATATCCTCTGTCGGCATTCCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG	1299	0.4935	MSFRSIVRDVRDGFGSLSRRSFDLRLQGHHRGKSHSSVHEVPAQPPVIQNSRWASLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVSNPEFCGKITFPVSLKQPGPRDGMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDAETISRSSSTYIGKLRSNFLGTKFLIYDTQPPHNYAQLPPPQPSQSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMNCTMCSIPESSLEPGGTVPGHPELLPHALEDSFRSTSFSKSIHSSSNFSSSRFSDIMWTGNEEEGSGGVKERPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVQPQPAAGAPTTPAQPGPADHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g3753	432	PRINTS	Tubby superfamily signature	333	350	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	185	209	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	389	408	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	351	367	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	169	185	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	236	263	IPR000007	-
	Alju02g3753	432	PRINTS	Tubby superfamily signature	410	432	IPR000007	-
	Alju02g3753	432	Pfam	F-box domain	53	101	IPR001810	GO:0005515
	Alju02g3753	432	Gene3D	-	48	102	-	-
	Alju02g3753	432	ProSitePatterns	Tub family signature 1.	351	364	IPR018066	-
	Alju02g3753	432	PANTHER	TUBBY-RELATED	45	430	-	-
	Alju02g3753	432	SUPERFAMILY	F-box domain	46	97	IPR036047	GO:0005515
	Alju02g3753	432	Gene3D	Tubby Protein; Chain A	112	426	IPR025659	-
	Alju02g3753	432	SUPERFAMILY	Tubby C-terminal domain-like	102	432	IPR025659	-
	Alju02g3753	432	FunFam	Tubby-like F-box protein	48	101	-	-
	Alju02g3753	432	CDD	F-box_AtTLP-like	53	97	-	-
	Alju02g3753	432	Pfam	Tub family	114	427	IPR000007	-
	Alju02g3753	432	ProSitePatterns	Tub family signature 2.	417	432	IPR018066	-
	Alju02g3753	432	FunFam	Tubby-like F-box protein	110	432	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g3753	Alju-ChrAlju02	56506109	56508695	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g3753	1	432	TUB Transcription Factor Family	AT1G76900	69.281	0.0	590

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Alju02g3753		Tub	2.6e-115	CL0395