Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju02g3725 | ATGAATCTTTCACTTGGAATGGCAGATCTTGCTAGCTACGGGAATGCCGACCGTGACATAGAGCAGGCATTAATTCCTTTGAAAAGGGGTGCTCAACTGCTTAAATATGGTCAGAAAGGAAAGCCCAAGTTTTATCCGTTCAGGCTTTCCAATGATGAATCATCTTTAATCTGGACTTCAAGCAGTGGAGAAAGAAGATTGAATCTTTCTTCTGTCTTGAGAATTATTCCTGGACAAAGAACAATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATCTTCTGGCCAAGGTGGGCGGTCAACAATTGACGGGTGGAGTGATGGGGGTCTTTATCTTGATGGTAACAGGGACTTGACATCAAGTAGTCCAAGAGAAAGTTCAGTTATTACACTAGATATTAAATCTCCTGATACTTCTGTGAATTTTAATCCTAATATTGCTTCAAAGTCCTTTCGATTGGTGAAGTCTGTGAATTATTCACCATTTGACTGTTCAAATATGCAAGCAAAAGGACCTGGTTCTGAAGCTTTTCGAGTTAGTGTTTCGAGTGCCCCCAGCACATCTAGTCATGGATCTGCACCAGATGACTGTGATGCTCTCGGTGATGTGTACATATGGGGGGAGGTTATCACTGAGAATGTTATGGGGGTTGGTGTAGATAAAATTTTCAATCACTTCAGTCCAAGGGTAGATGTGCTTTTGCCCAGGCCACTGGAGTCCAATGTAGTTTTGGACGTACATCACATAGCATGTGGTGTTAAGCATGCTGCACTAGTCACAAGGCAGGGTGAAGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAAGAATGTGGTTCAACCTTGTCTAGTTGAAGGTTTGGCTTCTACTACTGTTGATTTTGTTGCTTGTGGGGAGTTTCACACCTGTGCTGTTACGATGTCTGGAGAACTATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGATGTAAGTCATTGGATACCGAAACGAATTTCAGGTCTCCTAGACGGACTTCAAGTTGCTTTTGTTACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACCGGGCAACTCTTCACATTTGGTGATGGAACATTTGGGGTCCTGGGTCATGGAGGTAGGGAGAATGTTTCTTATCCTAGAGAAGTACAATCGTTGTCAGGGTTAAGAACGATAACTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTTGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGACTTGAACCAACTTGTGTGCCTTTGCTCATTGATTACAATTTTTATAAGATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACATCAGGACGTGTTTTTACGATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCACAGTCTGACGGAAAGCTGCCCTGCTTGATCGAAGACAAGCTTTCTGAAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTCTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGAAGGTTGGGTCATGGGGATGTTGAAGATCGAAAAACCCCGACTCTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCGGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGCCATTTGGTTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCTTGCAGTTCAAGGAAGGCATTGAGAGCAGCTCTGGCTCCTGATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTGGCAGAAGCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGATCAGGTTGGCTAAGTCACCTGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCTAGACAAGGCAAGAAGACTGATACATTCTCTCTGGTCCCCACGTCACAAGCCCCTTTGTTGCAGCTGAAAGAGGCTGTCTTGTCTACTGCTGTTGATCTGAGACGTACAGCTCCAAGGCCAGTTCTGACATCATCTGCAGTAAGCTCCAGGTCTGTGTCCCCTTTTTCTAGAAGACCAAGTCCACCCCGTTCAGCTACGCCTGTTCCAACAACATCAGGACTTTCTTTCTCAAAAAGTACAAATGATAGTCTGAAGAAAACCAACGAACTTCTAAATCACGAAGTGCTGAAGTTACGCTCTCAGGTTGAGAGCCTGAGAAAAAGATGTGATTTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAAGAAGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTAGCTGAGAGGCTACCTGCAGGAGCTCATGTCACTGACAGCATCCGGCCAGCTTACCAGCCAAATGGTCTAGAGCCAAATGATATCCACTATCCTGACTCAAATGGGGAGGGACATACCAGAGCAGAATCAATCAGTGGATCTAGCTTGGCTTCCTTCGCTCTTGAATCTTCTCTATTCAACAGAACTGAGGTCACAGGAACTTATGCAACCAATGCTTACCAGCAAAACCGGGTTCTTGGGCCTTCCAATGGGACAAATGAGTATCCAAATGCTATACTTGCCAATGGTGGCGTGTTTCAGGCAACTAGCAGTAGCATATTAGATACTAATGATGGCAGGAATTCGGGGCCTTTCCAAGATGGCGAGAGTGGTTCAAGATCGAGGAATGCTGTACTGGCTGTTAATCGTAATCAAATTGAGGCAGAATGGATTGAACAATATGAACCTGGGGTGTATATAACACTAATGGCTTTAAGTGATGGGACGAGAGATCTAAAACGAGTGCGCTTCAGTCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGTAGCAGCACTGATAAATCTTAG | 3222 | 0.442 | MNLSLGMADLASYGNADRDIEQALIPLKRGAQLLKYGQKGKPKFYPFRLSNDESSLIWTSSSGERRLNLSSVLRIIPGQRTICKDKVEAEVWIAGLKALISSGQGGRSTIDGWSDGGLYLDGNRDLTSSSPRESSVITLDIKSPDTSVNFNPNIASKSFRLVKSVNYSPFDCSNMQAKGPGSEAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVITENVMGVGVDKIFNHFSPRVDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVEKNVVQPCLVEGLASTTVDFVACGEFHTCAVTMSGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLDGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGGRENVSYPREVQSLSGLRTITVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPLLIDYNFYKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLIEDKLSEESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQSQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCFVKLNKVAEAGINNRRNAMPRLSGENKDRLDKSEIRLAKSPVPSNMDLIKQLDSKAARQGKKTDTFSLVPTSQAPLLQLKEAVLSTAVDLRRTAPRPVLTSSAVSSRSVSPFSRRPSPPRSATPVPTTSGLSFSKSTNDSLKKTNELLNHEVLKLRSQVESLRKRCDLQELELQRAEKRTQEAMAMAAEESAKSKAAKEVIKSLTAQLKDLAERLPAGAHVTDSIRPAYQPNGLEPNDIHYPDSNGEGHTRAESISGSSLASFALESSLFNRTEVTGTYATNAYQQNRVLGPSNGTNEYPNAILANGGVFQATSSSILDTNDGRNSGPFQDGESGSRSRNAVLAVNRNQIEAEWIEQYEPGVYITLMALSDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTDKS | 1073 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju02g3725 | 1073 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 601 | 663 | IPR017455 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 545 | 596 | IPR000408 | - | |
| Alju02g3725 | 1073 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 64 | 867 | - | - | |
| Alju02g3725 | 1073 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1009 | 1064 | IPR013591 | - | |
| Alju02g3725 | 1073 | CDD | FYVE_like_SF | 606 | 659 | - | - | |
| Alju02g3725 | 1073 | Gene3D | - | 19 | 82 | IPR011993 | - | |
| Alju02g3725 | 1073 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 180 | 430 | - | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 378 | 429 | IPR000408 | - | |
| Alju02g3725 | 1073 | MobiDBLite | consensus disorder prediction | 880 | 911 | - | - | |
| Alju02g3725 | 1073 | MobiDBLite | consensus disorder prediction | 755 | 796 | - | - | |
| Alju02g3725 | 1073 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 608 | 669 | IPR013083 | - | |
| Alju02g3725 | 1073 | Gene3D | - | 182 | 433 | IPR009091 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | BRX domain profile. | 1010 | 1065 | IPR013591 | - | |
| Alju02g3725 | 1073 | SMART | fyve_4 | 595 | 664 | IPR000306 | GO:0046872 | |
| Alju02g3725 | 1073 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 257 | 267 | IPR000408 | - | |
| Alju02g3725 | 1073 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 431 | 602 | - | - | |
| Alju02g3725 | 1073 | SUPERFAMILY | FYVE/PHD zinc finger | 597 | 667 | IPR011011 | - | |
| Alju02g3725 | 1073 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 364 | 374 | IPR000408 | - | |
| Alju02g3725 | 1073 | Gene3D | - | 434 | 607 | IPR009091 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 493 | 544 | IPR000408 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 323 | 377 | IPR000408 | - | |
| Alju02g3725 | 1073 | MobiDBLite | consensus disorder prediction | 756 | 774 | - | - | |
| Alju02g3725 | 1073 | MobiDBLite | consensus disorder prediction | 976 | 996 | - | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 440 | 487 | IPR000408 | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 271 | 319 | IPR000408 | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 378 | 426 | IPR000408 | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 492 | 541 | IPR000408 | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 546 | 593 | IPR000408 | - | |
| Alju02g3725 | 1073 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 322 | 374 | IPR000408 | - | |
| Alju02g3725 | 1073 | Coils | Coil | 796 | 872 | - | - | |
| Alju02g3725 | 1073 | Pfam | FYVE zinc finger | 597 | 663 | IPR000306 | GO:0046872 | |
| Alju02g3725 | 1073 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 603 | 671 | - | - | |
| Alju02g3725 | 1073 | MobiDBLite | consensus disorder prediction | 782 | 796 | - | - | |
| Alju02g3725 | 1073 | Pfam | Transcription factor BRX N-terminal domain | 847 | 876 | IPR027988 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 209 | 270 | IPR000408 | - | |
| Alju02g3725 | 1073 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 416 | 426 | IPR000408 | - | |
| Alju02g3725 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 327 | 343 | IPR000408 | - | |
| Alju02g3725 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 443 | 457 | IPR000408 | - | |
| Alju02g3725 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 534 | 552 | IPR000408 | - | |
| Alju02g3725 | 1073 | PRINTS | Chromosome condensation regulator RCC1 signature | 272 | 288 | IPR000408 | - | |
| Alju02g3725 | 1073 | SUPERFAMILY | PH domain-like | 19 | 100 | - | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 441 | 492 | IPR000408 | - | |
| Alju02g3725 | 1073 | SUPERFAMILY | RCC1/BLIP-II | 208 | 598 | IPR009091 | - | |
| Alju02g3725 | 1073 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 271 | 322 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju02g3725 | Alju-ChrAlju02 | 56154482 | 56162034 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju02g3725 | 1011 | 1067 | Major Intrinsic Protein MIP | AT1G31880 | 54.386 | 8.36e-14 | 72.4 |