Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3627 ATGTCAGATTCCGACGACGAAAATCCCGAACGTACTCCCCAATCAAAGCCCACCGCCGGCGAACCTGGCTCTGTAATGGATTTCGACCTCGACCTAGAGAGTTCCTGGCCTTTAGATCAGATAGCTTTCACCTCTAACCCTATGTCCCCTTTTCTGATTTCCGCCACATCGGACCAACCTTCTTCTCCTCTCTGGGTTTTCTCAGACGTTGACGATGATAAGCAAGCTAAGCTTGCTGCTTCGGCCCTCTCCGATGTCCATCGATTGCTCTCCTGCAATTCGAATTCAGTAGCTGAAAAACCTGTGGAGAATGAAGAGACGAAAAAAACCCCTGCGCCCTTTGTTTCCCTGCCACCAGTACCATTAGAAACTCCAGAATGGTATTGTTTGATTAAAGAAAGGATGACACAAGCACTAAGGTACTTCAAAGAATTGGCTGACCAGAATGTTCTAGCTCAGGTTTGGGCACCTGTGAGGATGGGGAACCAGTATGTCCTTACAACTTCAGGGCAACCCTTTGTTCTTGATTCACATAGCAATGGACTCTATCAGTATAGAACAGTCTCACTGATGTACATGTTTTCAGCGAGTGGGGGAAATGATGGAATCCTGGGGCTTCCTGGTCGTGTCTTCCATCAGAAATTGCCAGAATGGTCTCCCAATGTTCAATATTATTCTAGTCAAGAGTATCCCCGCCGGAATCATGCTCAACATTACAATGTTCGTGGAACTGTGGCTCTGCCTGTGTTTGAACCTTCAGGGCAGTCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCGCCTGAGGTTGAAAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGATCATCCATTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATCTTGGAGATATTGACCGTGGTCTGTGAAACTCATAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGAAGCGTTCTGGCCAATGGTGGAGGCCTGAAGAAGAGCTGCTCCAGCTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATATTTATCAGGCAACATGTGCTTCTGTAGGAACATTACCCAGTTCTGCAAAATTGAGTACCCTTTGGTACATTATGCTCTCATGTTTGGTGTAACCAGTTCTTTTTCTGTCTGTTTGCAAAGCTCTCATACAGGACGTGATGATTATATATTGGAGTTTTTTCTACCTCCAGAGATCACAGACTTGAACGAACAAAAGACTATGTTGGGATCTATAGTAGCAACAATGAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTCTTGAACTTGAAGAGAAATGTTCAGTTGAAATTATCGAAGCAACGAGTGAAAGAGTTTATTCAAGACTCGAATCTATTATGATTACCGAACCTACTGAATTGCCACATGGACCTGACGCCTTGCCGGATAGGGGGGAGATTTTACCACTGGATACATCAGAGCAGCCAATGGCATTCTTAGATGATATTAATGGTATGGGGAGTCTTGGTGATAGAACTGGTGGAACCTCCGATCAGATATCCCCCTTGGAGACTAAAAACATAAAGAAACCCTCAGAGAGAAAACGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTTTTGCAAAACTATTTTGCTGGGAGTCTTAAAGATGCTGCTAGGAGTCTCGGTGTTTGTCCCACTACAATGAAGCGCATCTGTAGGCAGCATGGAATATCCCGTTGGCCGTCACGGAAGATTAACAAGGTTAATCGTTCCTTGTCCAAGCTCAAGCGGGTCATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTAAATTCTCTCACTACCAGTCCACTTCCCATGGCTATTGGTTCCTTTCCTGAGCCTTCAAACAAGTTCTGTCAGCAAGCCTCGCTAAGCACTCAACTGGCAGAACCACAGATGAAAGACAGCGAGATGGATGCCTCCAAAGTATCGGAAACAAACAGGCAAAGTGAGATAGAACATCAGTTGGCAGGAGGAAGGGTACAAAGTCCTGAGACACATGAGAAAAGTGGGTTCAGTCAGGAGTTTAGTAAAGGCCCTAGAGGACCTAGAACAGGGAGTGCCTCAAGCGAAGATGGGGCAAACCCTGCTTCTCATGGTTCGTGTCATGGTAGTCCCCCAATTGAAAGTTCACCTCCAAAAGATATATTCGTTACAACCAATACTGATCGGTATGCTGCTGCTAAGGGATCACCGGAGTTGCAGCCAACAAGTAAACTGAATAGTCCGCCTGGGTATGCTGTGCCCAACCTCATGCCCACAGAACTTCAGGAGTCATTTGGAGGAATGCTGATAGAGGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTGCAGCAGCAGATGCCAATGTGGAGGATCAGTTACCAGAAGCTTGTGCTGCTAATCCTCCATGCTCTGACTTGGGCCCTAAGCAATGCACCAATACTCTTGGTGACACGATGACGCCTTTTGCAGCTCGGAGAGAAATGAAGACCGTGACTATAAAAGCAACATACAGAGAAGACATCATTCGGTTTCGAATCCCCTTAACCTCGGGCATCGTGGAGCTGAAAGAAGAAGTTGCCAAGAGACTGAAACTTGAGGTGGGTATTTTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATTGTCTGTGATGCAGACCTTCAGGAGTGCATGGATATCTCTAGATCATCCGGTACTAACATAACCAGGCTTTTGGTACATGATATATCATCCAATCTCGGAAGTTCATGTGAGAGCTCAGGGGAGTGA 2964 0.4534 MSDSDDENPERTPQSKPTAGEPGSVMDFDLDLESSWPLDQIAFTSNPMSPFLISATSDQPSSPLWVFSDVDDDKQAKLAASALSDVHRLLSCNSNSVAEKPVENEETKKTPAPFVSLPPVPLETPEWYCLIKERMTQALRYFKELADQNVLAQVWAPVRMGNQYVLTTSGQPFVLDSHSNGLYQYRTVSLMYMFSASGGNDGILGLPGRVFHQKLPEWSPNVQYYSSQEYPRRNHAQHYNVRGTVALPVFEPSGQSCIGVLELIMTSQKINYAPEVEKVCKALEAVNLKSSEILDHPFTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGRAYLSGNMCFCRNITQFCKIEYPLVHYALMFGVTSSFSVCLQSSHTGRDDYILEFFLPPEITDLNEQKTMLGSIVATMKQHFHSLKIAAGLELEEKCSVEIIEATSERVYSRLESIMITEPTELPHGPDALPDRGEILPLDTSEQPMAFLDDINGMGSLGDRTGGTSDQISPLETKNIKKPSERKRGKTEKSISLEVLQNYFAGSLKDAARSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLTTSPLPMAIGSFPEPSNKFCQQASLSTQLAEPQMKDSEMDASKVSETNRQSEIEHQLAGGRVQSPETHEKSGFSQEFSKGPRGPRTGSASSEDGANPASHGSCHGSPPIESSPPKDIFVTTNTDRYAAAKGSPELQPTSKLNSPPGYAVPNLMPTELQESFGGMLIEDAGSSKDLRNLCPAAADANVEDQLPEACAANPPCSDLGPKQCTNTLGDTMTPFAARREMKTVTIKATYREDIIRFRIPLTSGIVELKEEVAKRLKLEVGIFDIKYLDDDQEWVLIVCDADLQECMDISRSSGTNITRLLVHDISSNLGSSCESSGE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3627 987 Pfam PB1 domain 892 973 IPR000270 GO:0005515
Alju02g3627 987 MobiDBLite consensus disorder prediction 1 29 - -
Alju02g3627 987 CDD PB1_NLP 893 973 IPR034891 -
Alju02g3627 987 PANTHER PROTEIN NLP8 58 986 IPR045012 GO:0003700
Alju02g3627 987 Gene3D - 889 973 - -
Alju02g3627 987 MobiDBLite consensus disorder prediction 690 782 - -
Alju02g3627 987 Pfam RWP-RK domain 590 638 IPR003035 -
Alju02g3627 987 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Alju02g3627 987 SMART PB1_new 892 974 IPR000270 GO:0005515
Alju02g3627 987 MobiDBLite consensus disorder prediction 700 714 - -
Alju02g3627 987 ProSiteProfiles PB1 domain profile. 892 974 IPR000270 GO:0005515
Alju02g3627 987 SUPERFAMILY CAD & PB1 domains 889 978 - -
Alju02g3627 987 FunFam RWP-RK domain-containing protein 889 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3627 Alju-ChrAlju02 55090632 55095092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3627 265 987 NLP Transcription Factor Family AT4G24020 54.025 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Alju02g3627 PB1 2.8e-18 CL0072