Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3584 ATGGTGAGGGGGAAGATTGAAATGAAGAAGATTGAGAATGCAACAAGCCGACAAGTAACGTTTTCAAAGCGAAGAAGTGGGCTTCTAAAGAAAGCTTATGAGCTATCAGTTCTTTGTGACGCCCAAGTAGCTGTAATTATCTTCTCACAAAGAGGCAGACTCTATGAGTTCTCAAGTTCTGACTTCAGAAAGATTTTAGAACGGTACTGGAAATACAGCAAAGGCGACCGACTGAGCATTCACTCTGACGAAGAACAATACAGCCAGCAAATGAAGGTTGAATGTGCAACGATGGCCAAGAAGATAGAGCATCTTCAACTTTCTCAAAGGAAACTAATGGGAGAAGAGTTGAGTTCATGTTCAATTGAAGAACTTCAAGAAATAGAGAATCAGCTCATCACTAGTTTGCAAAATGTCAGGCTTAGAAAGAGTCAGCTATTCCAACAGCAAATTCAGCAACTTCAAGACAAGGATAGAAATTTGGTCCAACAGAACGCCAGCTTAACCAAATTGTGTGGAAGAACAGTGCAATGGCAGAATCAATGGACTAAGCACAAAGAAGCAGAAGTAGAAACAGAATTACGTATTGGACTTCCACAAAATCAATGTTCATAG 615 0.4016 MVRGKIEMKKIENATSRQVTFSKRRSGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSDFRKILERYWKYSKGDRLSIHSDEEQYSQQMKVECATMAKKIEHLQLSQRKLMGEELSSCSIEELQEIENQLITSLQNVRLRKSQLFQQQIQQLQDKDRNLVQQNASLTKLCGRTVQWQNQWTKHKEAEVETELRIGLPQNQCS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3584 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g3584 204 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Alju02g3584 204 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Alju02g3584 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Alju02g3584 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Alju02g3584 204 Coils Coil 151 171 - -
Alju02g3584 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju02g3584 204 ProSiteProfiles K-box domain profile. 88 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g3584 204 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Alju02g3584 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3584 Alju-ChrAlju02 54458501 54464742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3584 1 202 MADS-box Gene Family AT5G51860 53.465 1.16e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju02g3584 K-box 5.5e-24 No_clan