LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g3577	ATGGATCTTTCTAAGAGTAACAGTGGTTCTGAACCTTCAACTTCTTACAGTTGTTTCAAAGTAGCAAATCTAAGTGAAACAATACTGGACACAAAGGAGTCTGCTAATTTGAAAGATCGTTATGTTCTTGGCGAGCAGTTAGGTTGGGGGCAGTTTGGTGTTATCAGGGCGTGCACGGACAAGTTGACTGGAGAGGTTTTAGCCTGTAAGTCAATTGCTAAAGATAGATTGGTAACATTAGATGATCTGCGAAGTGTCAAACTTGAGATTGAGATAATGGCTAGGCTATCTGGCCACCCAAACGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGACTTTGTACATCTGGTGATGGAGCTTTGTGCTGGCGGTGAGCTATTTCACCGCCTAGAGAAGCATGGACGGTTTTCTGAATCTGAAGCCCGGGTTCTCTTTAGGCACCTAATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCCGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCAATTAAATTGGCAGATTTTGGACTTGCAACTTACATCAAGCCTGGACAAAGTTTGCATGGGTTAGTAGGGAGTCCATTCTATATAGCTCCAGAGGTACTTGCAGGTTCTTATAACCAGGCTGCTGATGTTTGGAGTGCAGGTGTTATTCTTTACATTTTACTTAGTGGGATGCCTCCATTTTGGGGTAAGACCAAGTCACGGATCTTTGAAACCGTTAAGGCGGCTGACTTGAGGTTCCCATCTGAACCTTGGGATCACATTTCTAAATCAGCCAAGGATTTGATTAAGGGAATGCTCTGTACAGAACCTTCTCAAAGGCTCACTGCTCAGCAGGTCTTAGATCATTGCTGGATGGAGAGCAATCAAAGAAATTCTGAACAACTAATTGAATGTGACATCAAAAGTTGTGGTGAATGGGATGTTGGTGATAGCTCATTCTGTGTGTCCTTTATGCCCAGGAATCAGGACATCAGCTTTGGTGCCGAATCTCCTGCATGTGATGCTCAGTCTCCAACTTTCACATGCAGATCATCATTTTCTTCATTTCTGGCAGAACCGTCAACACCTTGTTCAGCTTTGGGTGGGTTTTCATTCAAGAGTCCCGGTGATTCTGCTGGTTTGGACTTCTCTTCTCCTGTTTCTTCAATGCCTAGCTTTGCATTTCTCAGCGCCAATTCTGTTGTTGAGAAAAGGAGTTGTACATTAGATTTCTCAACTAATGAATCTGTGAAGACAATTGCTGAAGAATCAAGCTTGGGAAAACTACTTCTGTCACCAGATTCTGCTCTTTGTTGTGGACCGGATATTAAAGCGAGTAACCGTAGGCCAATGGAGACTAAAAGGTCTGGCGGTACCAATGGTCATAGGGTTTTAGGAATCCACAGCAAGAGAAACCGAACAATCGGGCTTGGCGAACGTGAGCAAATTGACCTTGTGGTGACCGAATCTGTCATTCGATGGTCATCGTGCACGCAACTCCCAACATCTCTTAGGTCATCTCTTGTCTGTTGA	1554	0.4389	MDLSKSNSGSEPSTSYSCFKVANLSETILDTKESANLKDRYVLGEQLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTLDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKHGRFSESEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFETVKAADLRFPSEPWDHISKSAKDLIKGMLCTEPSQRLTAQQVLDHCWMESNQRNSEQLIECDIKSCGEWDVGDSSFCVSFMPRNQDISFGAESPACDAQSPTFTCRSSFSSFLAEPSTPCSALGGFSFKSPGDSAGLDFSSPVSSMPSFAFLSANSVVEKRSCTLDFSTNESVKTIAEESSLGKLLLSPDSALCCGPDIKASNRRPMETKRSGGTNGHRVLGIHSKRNRTIGLGEREQIDLVVTESVIRWSSCTQLPTSLRSSLVC	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g3577	517	FunFam	Calcium-dependent protein kinase 1	43	126	-	-
	Alju02g3577	517	CDD	STKc_CAMK	40	298	-	-
	Alju02g3577	517	SMART	serkin_6	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g3577	517	SUPERFAMILY	Protein kinase-like (PK-like)	38	372	IPR011009	-
	Alju02g3577	517	ProSitePatterns	Protein kinases ATP-binding region signature.	47	74	IPR017441	GO:0005524
	Alju02g3577	517	Pfam	Protein kinase domain	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g3577	517	Gene3D	Phosphorylase Kinase; domain 1	42	127	-	-
	Alju02g3577	517	ProSiteProfiles	Protein kinase domain profile.	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g3577	517	Gene3D	Transferase(Phosphotransferase) domain 1	128	318	-	-
	Alju02g3577	517	FunFam	Phosphoenolpyruvate carboxylase kinase	128	315	-	-
	Alju02g3577	517	PANTHER	SERINE/THREONINE-PROTEIN KINASE	30	312	-	-
	Alju02g3577	517	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g3577	Alju-ChrAlju02	54354213	54356677	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g3577	36	302	EF-hand Containing Proteins	AT5G12180	51.685	3.91e-97	302

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Alju02g3577		Pkinase	1.3e-72	CL0016