Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3569 ATGGATGTTACAGACGACGGTGATGGTGTTGCAGATGATGGCTTCTCCGCAGGAAGGCGGCTGATGACGTATAGAGGTATGGCGATTTTGGTGTATGGGTGGTTGATTGTGGGAGGTTTGATGATGGCAGTGGGCTTATCAATGCGAATCAGTGGCGGCAAGGTTTCTGCTTGGAAAGATCTGATAACTCTCTGGGCTGATCTGTTCAGAAAGGTTTGTTCAATTTCACTGCGTACAATAAGGGTGTCTGATCTGGAGCGGCTGTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCCGGGTTTGCCTTCATCTACATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCACTTGATCGGGTAGAATTTGGTCGAAAGGGACGCAGACTTCGCGTGGAATGGACAAAAAATGAACGTGGCGGCGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCAAGGCCATCAAAGACTTTGTTTGTTATTAATTTTGATACAAATCATACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATCATTAATGTGAGGATTAAAAGGAATTTTGCATTTATCCAGTATGACTCATATGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCAAGTCATCACAGTTGAATTTGCTGCGGAGAATGATGATGAGAGGAGGAATGCACACAGTCCTGATAGAAGCCATGATCGTCCACGTGAGATAAGCTATGATAGAAGGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCCGATTATGGCCGTGGCTCTAGCCCATATAGGAGAGAGAGGAGCAGCCTGGACTATGGTCATGACCGTAGTCAGATTTCCCAACAGATTGAGAGAGGTAGCCCCGATTATAATTGCAGGAGCCGTAGTCCATATAGAAGAGAGAGGGATGGTTCTGACCCTGTTCGCGGTTCTAGCCATAGTCCTGATCATAAAGAACAAGTTAGAACTGACCGTGGCAGTTCTCACTCCCATAGTCCCGATGGAGGAGAGAGGGTAAGCCCTCAAAATGGTGGTTCCGAGAACAGCCCTTCCTATAGGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTACAAGTAGTCCTGATGCTAGAGGTGATTCTAGTCCTTCCAATGGTGATGAAGATCGCTTAAATTCCGCACCTGAGCCAAAGGACAATGCTGACCATGATGATGCTCTTGAAAGTCCCATGAATGAAACAGACCGCAGCCAATCTCCTGCTGCTGAAGAATGA 1314 0.468 MDVTDDGDGVADDGFSAGRRLMTYRGMAILVYGWLIVGGLMMAVGLSMRISGGKVSAWKDLITLWADLFRKVCSISLRTIRVSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKNERGGGIRRPGSSRRSSANSRPSKTLFVINFDTNHTRTRDLERHFEPYGKIINVRIKRNFAFIQYDSYDDAIRALEATNMSKLLDQVITVEFAAENDDERRNAHSPDRSHDRPREISYDRRRSPSPYRRERGSPDYGRGSSPYRRERSSLDYGHDRSQISQQIERGSPDYNCRSRSPYRRERDGSDPVRGSSHSPDHKEQVRTDRGSSHSHSPDGGERVSPQNGGSENSPSYRKRVSPENGHGSTSSPDARGDSSPSNGDEDRLNSAPEPKDNADHDDALESPMNETDRSQSPAAEE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3569 437 SMART rrm1_1 165 231 IPR000504 GO:0003723
Alju02g3569 437 SMART rrm1_1 79 137 IPR000504 GO:0003723
Alju02g3569 437 MobiDBLite consensus disorder prediction 314 352 - -
Alju02g3569 437 MobiDBLite consensus disorder prediction 237 437 - -
Alju02g3569 437 Gene3D - 71 147 IPR012677 -
Alju02g3569 437 Gene3D - 152 250 IPR012677 -
Alju02g3569 437 MobiDBLite consensus disorder prediction 353 402 - -
Alju02g3569 437 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 80 179 - -
Alju02g3569 437 MobiDBLite consensus disorder prediction 237 293 - -
Alju02g3569 437 SUPERFAMILY RNA-binding domain, RBD 81 238 IPR035979 GO:0003676
Alju02g3569 437 MobiDBLite consensus disorder prediction 294 309 - -
Alju02g3569 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 141 IPR000504 GO:0003723
Alju02g3569 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 129 IPR000504 GO:0003723
Alju02g3569 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 228 IPR000504 GO:0003723
Alju02g3569 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 235 IPR000504 GO:0003723
Alju02g3569 437 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3569 Alju-ChrAlju02 54211864 54221037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3569 84 240 Eukaryotic Initiation Factors Gene Family AT1G49760 22.674 1.16e-06 48.9