Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3552 ATGTTTGTGACGAGAGAATTAGTGTTGCAGAGAAGGAAAATGGATCATCATAATCAGGGGCATGTTGAGATGGGTCTTCTTGGGGAAAACTTCGATCAGAGTTTGATTGCGAGGATTAGGGATAATGATGGATATGAGAGCCGTTCTGGGAGTGATAATTTCGATGGAGTTTCAGGCGAGGATGATCAGGAAGCTGGTGATGATACACCTAATAATCGGAGATCCAAGAAGTACCATAGACACACTCCTCACCAAATTCAAGAGCTTGAAACTTTCTTTAAGGATTGTCCTCATCCTGACGAGAAGCAAAGACTGGAACTTAGTAGGAGGCTTGGCCTGGAGACTAAGCAAGTCAAATTCTGGTTTCAAAATCGAAGAACCCAAATGAAGACCCAGCTGGAGCGGCATGAGAATCTGATATTGAGGCAAGAAAATGACAAGCTGAGAGCAGAGAACAGTATGATGAAGGAAGCCATGGCCAACCCAATATGCAGCAACTGTGGAAGCCCAGCCATACCTGGGCAAATCTCATTCGAAGAACACCAACTAAGGATCGAAAATGCTCGATTAAAGGACGAACTGAACCGTATCTGTGCCTTGGCCAACAAGTTTCTGGGAAGGCCAATCTCAACCATGGCTCTTCCAGGCTCAAATTCTGGCCTTGAACTAGCCATTGGAAGGAGCAATAATAGCAATAACAACACTTTCACTGGGTTTGGTAGCATGGGTGTTGTTGGGTCAAGTTTTCCTATGGGACTTGATATGGGGATGATGCAAATGGGAAATAATAATATTAATGATCAAGTACAGGCTGAGAGATCTATGCTTATAGATCTTGCTTTGTCTGCTTTGGATGAGCTAATGAAAATGGCTCAAGCTGATGCCCCTCATTGGATTAAGACCTTGGATGGTGATAATGAAGTACTGAATCTCGATGAGTATGTTCGGATTTGTCCTCCTTGTCTTGGTCCCAAACCTCCTGGTTATGTCACTGAAGCTACTAGAGAAACTGCAATAGTTATGATGAACAGTTTGGCTCTCATTGAAACATTGATGGACATGAATCGATGGGTGGAGATGTTTGGGAGCATAATTGCTAGAGTTGTGCCTCTCGATGTGGTATCAAGTGGCGTCGGAGGGACCAGAAGTGGTACTTTGCTCGTGTTGGAAGCTGAGTTGCAAATGCATACGCCGCTGGTGCCGGTAAGGCAAACGAGGATGCTGAGGTTATGCAAGCAGCAATCGGAAAGCCAGTGGGCAGTGGTTGATGTTTCAGTTGAGATGGGTCGTGACCCTACTAATGCACACCCTTTTGTCAGATGCAGGAGGCTTCCATCTGGTTGCATTGTCCAAGATATGCCCAACGGTTACTCCAAGGTTACTTGGGTGGAGCATTGGGAGTACGATGAGAATGTGGTGCACCAACTTTACCGTCCCATGGTGAACGCCGGCGTTGGTTTCGGTGCTCATAGATGGCTGGCCACCCTACAAAGGCAATGCGAATGCTTGGCCATCTTGTCCTCTTCCATCCCCACCGATGATCACACAACACTGAGCCAGGGCGGTCGGCGAAGCATGGTGAAGCTGGCACAACGCATGGTGGACAACTTCTGCTCTGGGATAGTAGCTTCCTCTGGCCGGAGGTGGGACAGCCTTCATGTCGATACCATCGGAGAAGACGTCAAGATAATGACTCGGACCAATGAAGGCGGCGATCCCGGCGATCCTCACGGAGTTATGCTCAGCGCCACCACTTCCTTCTGGCTGCCTGTGTCCCGGCAAAGGTTATTCGACTTCCTCCGTGACCAGCGCCGGAGATTCGAGTGGGACATCTTGTCCAGCGGCGCCGGAACCATGCAGGAAGTGGCTCTCATTGCAAAAGGACAGTCACATGGTAACTGTGTTTCCCTTCTCCGGGCCAACGGTGTGAATGGGAACGAGACGGGCATGGTGATACTGCAAGAGACATGGACGGATGCGACAGGGTCGATGGTGGTTTATGCACCGGTGGATGTGCAGTCGTTGAACGTGGTGATGGGTGGCGGCGATTCTTCCTACGTGGCTCTCTTGCCTTCTGGCTTCGCCATTCATTCAGATGGTACTAACGTGGGCGGCGGCGGTAACGGGAGTCCAGGAAGCGACGGCAGCGGCGGAGGAAGCCTTCTGACAGTAGGGTTGCAGATACTGGTGAACAGCCTGCCAACGGGGAAGCTGACGGTGGAGTCGGTAGAAACAGTGAACAATGTGATGACGGCCACCGTTGAGAAGATCAAAGAGGCGGTTAGAGGTGGCTGA 2295 0.4976 MFVTRELVLQRRKMDHHNQGHVEMGLLGENFDQSLIARIRDNDGYESRSGSDNFDGVSGEDDQEAGDDTPNNRRSKKYHRHTPHQIQELETFFKDCPHPDEKQRLELSRRLGLETKQVKFWFQNRRTQMKTQLERHENLILRQENDKLRAENSMMKEAMANPICSNCGSPAIPGQISFEEHQLRIENARLKDELNRICALANKFLGRPISTMALPGSNSGLELAIGRSNNSNNNTFTGFGSMGVVGSSFPMGLDMGMMQMGNNNINDQVQAERSMLIDLALSALDELMKMAQADAPHWIKTLDGDNEVLNLDEYVRICPPCLGPKPPGYVTEATRETAIVMMNSLALIETLMDMNRWVEMFGSIIARVVPLDVVSSGVGGTRSGTLLVLEAELQMHTPLVPVRQTRMLRLCKQQSESQWAVVDVSVEMGRDPTNAHPFVRCRRLPSGCIVQDMPNGYSKVTWVEHWEYDENVVHQLYRPMVNAGVGFGAHRWLATLQRQCECLAILSSSIPTDDHTTLSQGGRRSMVKLAQRMVDNFCSGIVASSGRRWDSLHVDTIGEDVKIMTRTNEGGDPGDPHGVMLSATTSFWLPVSRQRLFDFLRDQRRRFEWDILSSGAGTMQEVALIAKGQSHGNCVSLLRANGVNGNETGMVILQETWTDATGSMVVYAPVDVQSLNVVMGGGDSSYVALLPSGFAIHSDGTNVGGGGNGSPGSDGSGGGSLLTVGLQILVNSLPTGKLTVESVETVNNVMTATVEKIKEAVRGG 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3552 764 CDD homeodomain 76 132 IPR001356 GO:0003677
Alju02g3552 764 SMART HOX_1 74 136 IPR001356 GO:0003677
Alju02g3552 764 SUPERFAMILY Homeodomain-like 60 132 IPR009057 -
Alju02g3552 764 Gene3D - 371 500 IPR023393 -
Alju02g3552 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 761 IPR042160 -
Alju02g3552 764 Gene3D - 61 147 - -
Alju02g3552 764 ProSiteProfiles START domain profile. 269 505 IPR002913 GO:0008289
Alju02g3552 764 Pfam Homeodomain 76 130 IPR001356 GO:0003677
Alju02g3552 764 SUPERFAMILY Bet v1-like 271 502 - -
Alju02g3552 764 SUPERFAMILY Bet v1-like 522 753 - -
Alju02g3552 764 FunFam Homeobox-leucine zipper protein HDG1 59 148 - -
Alju02g3552 764 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Alju02g3552 764 CDD START_ArGLABRA2_like 273 501 - -
Alju02g3552 764 SMART START_1 278 502 IPR002913 GO:0008289
Alju02g3552 764 MobiDBLite consensus disorder prediction 43 83 - -
Alju02g3552 764 Pfam START domain 279 502 IPR002913 GO:0008289
Alju02g3552 764 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Alju02g3552 764 Coils Coil 126 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3552 Alju-ChrAlju02 53958341 53962514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3552 19 761 Homeobox Transcription Factor Family AT3G61150 53.571 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju02g3552 START 8.2e-49 CL0209