Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3542 ATGGCTCCGCCGACGGTGGATCACAACGGCGAGTCCACATCCGGTGAGAACCAGAGATCTATTCCTACGCCGTTCCTCACCAAGACGCATCAGCTTGTCGACGATCGCACCATAGACGATGTGATTTCCTGGAACGAAGATGGATCTACTTTCATCGTTTGGAACCCTACCGAATTCGCCAGAGATTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTTAACACCTATGGATTCAGAAAGGTTGTACCGGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCCGAGGCGAGAAACGGCTTCTGTGCGAAATACAGCGACGGAAGATTTCGACGCCGACACCGACGTCGCCGGCAGTAAAGGCCGGAGCCAATCCGACTGTGGCAGTCCCGGCGCCGGTGCCGTTGACTTCTATACCAACGGCGATGCCGATCATATCGCCATCAAACTCAGATGAGGAGCAAGTGATTTCGTCGAATTCGCCGTCCTCAAAAGCTCCGGCTGATCTCATGGACGAGAACGACCGGTTGCGAAAAGAGAACGTGCAGCTGTCGAAGGAATTAACGGAGATGAGATCTCTCTGCAACAATATTTTCTCACTGTTATCCAACTACGCTAACAACCAAATCGACGGTGCTTTGCAAGGAAAAGACACCGTGCAACCGCTGGATTTGATGCCGTCGAAACGGAACTCCGGGGAGGAGGAGCCGTCGGCAGTGGAGGAGCTAAATCCGAAGCTGTTTGGGGTGGCGATTGGTGCGAAGAGAGCGAGAGAAGCGAGCGGAGGAACGGAGGAGGAGGACACACTGTTAAGCTTGCATCAGCCGGGGCCAGCGGAGGTGAAATCAGAGCCGTTCGATTGTCTGAATCATCGAGAGAATCAGGAGACGCCGTGGCTGAATCACTGCGAGGTAGCAAATCAGAGGGTGTGTAATTAG 957 0.5277 MAPPTVDHNGESTSGENQRSIPTPFLTKTHQLVDDRTIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPTPTSPAVKAGANPTVAVPAPVPLTSIPTAMPIISPSNSDEEQVISSNSPSSKAPADLMDENDRLRKENVQLSKELTEMRSLCNNIFSLLSNYANNQIDGALQGKDTVQPLDLMPSKRNSGEEEPSAVEELNPKLFGVAIGAKRAREASGGTEEEDTLLSLHQPGPAEVKSEPFDCLNHRENQETPWLNHCEVANQRVCN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3542 318 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 MobiDBLite consensus disorder prediction 155 175 - -
Alju02g3542 318 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 246 IPR027725 -
Alju02g3542 318 MobiDBLite consensus disorder prediction 7 23 - -
Alju02g3542 318 MobiDBLite consensus disorder prediction 155 173 - -
Alju02g3542 318 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Alju02g3542 318 Coils Coil 180 200 - -
Alju02g3542 318 Gene3D - 17 115 IPR036388 -
Alju02g3542 318 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g3542 318 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g3542 318 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3542 Alju-ChrAlju02 53867752 53868794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3542 1 318 HSF AT5G62020 50.296 1.69e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju02g3542 HSF_DNA-bind 1.2e-32 CL0123