Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3538 ATGATCGAAACCAGACGATCTCACTTCAGCCTACTCTTCCTTCTCCTAGCGACGACATATGTCTCCGGCGGTGCCGTTCCACACTCAGCTACTGCACCCTCGCCGTCGTCGATGACTCCCGAGGTCGACATCGCGATTTTTCTCAAGGCCACAGCCGTCGTATGCGCTGTCCTCTTCATCACCTTCTTTTCGGCATACCTCAATTACTGGACCGCCGTAATTTTCGCCAGACAGCACGATTTGGCCGCCGGCAGCCGTGACGGCGCAAGTTGGCGGTGTTCTTGCTCTCGAGGAATCGACCGGAAAATCCTGGACACATTCCCGATCCTCGTGTATTCCACCATCAAAAACCACAAAATCGGAAAAGGAGAGCTCCAATGCGCAGTGTGCTTGAGCGAATTCGAAGACCACGAGACTCTCCGTTTGATACCAAAATGCAATCACGTGTTTCACCCGGAGTGTATCGAGGCCTGGTTAACTTCTCATGATACTTGTCCCCTTTGTCGCGCAAATCTGAATCCAGATTCCGGTGAAGTCGCCATCAGAATGCCGACTCAGTTGAACGCTGATGAACTGAACGAAGAAAGTGGAGGCAGAAGCATGAGAAGTGAAGTGCAGAACCAGCCAGCAGCGCAGGTGCCAAACGACGTCGGTGCGAGCAGCAGCAACTCAGCAGACAACATGGAGGAAGACTGCAGAGCTAAGCCAAGTCGGAATCGGAGAACGAGATGGGGAATGTACGAGAGGCTTCAGAGATCCAACTCGACGGGACATTCGCTGGTTGAACAGCCTGAAGCGACGCCGTCGAGCGAACATGAGAGGTATACGCTACGGTTGCCGGAGGAGCTGTGGAGGTATATTCTGATGAATCATGCGGCCATCGGGCGATCGGAGAGCTACCATGGGGTGACGCGGATGAAAGGGATGGGTTGGAGTGACAGCGATGAAAGCAGCAGAGGGAACGTTAACATCACGACGCCTCCATTTGTTCCTCGCAAGGATTGA 1005 0.5363 MIETRRSHFSLLFLLLATTYVSGGAVPHSATAPSPSSMTPEVDIAIFLKATAVVCAVLFITFFSAYLNYWTAVIFARQHDLAAGSRDGASWRCSCSRGIDRKILDTFPILVYSTIKNHKIGKGELQCAVCLSEFEDHETLRLIPKCNHVFHPECIEAWLTSHDTCPLCRANLNPDSGEVAIRMPTQLNADELNEESGGRSMRSEVQNQPAAQVPNDVGASSSNSADNMEEDCRAKPSRNRRTRWGMYERLQRSNSTGHSLVEQPEATPSSEHERYTLRLPEELWRYILMNHAAIGRSESYHGVTRMKGMGWSDSDESSRGNVNITTPPFVPRKD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3538 334 Pfam Ring finger domain 126 169 IPR001841 -
Alju02g3538 334 SUPERFAMILY RING/U-box 118 176 - -
Alju02g3538 334 MobiDBLite consensus disorder prediction 192 227 - -
Alju02g3538 334 MobiDBLite consensus disorder prediction 248 266 - -
Alju02g3538 334 MobiDBLite consensus disorder prediction 311 334 - -
Alju02g3538 334 SMART ring_2 127 168 IPR001841 -
Alju02g3538 334 MobiDBLite consensus disorder prediction 192 274 - -
Alju02g3538 334 CDD RING-H2_EL5-like 126 169 - -
Alju02g3538 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 204 - -
Alju02g3538 334 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Alju02g3538 334 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Alju02g3538 334 MobiDBLite consensus disorder prediction 228 247 - -
Alju02g3538 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3538 Alju-ChrAlju02 53830297 53833385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3538 11 290 Rapid Response to Elicitors AT3G05200 35.192 2.39e-46 160