Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3534 ATGGGTGTGAAGCATTTGTGGGATATACTCGAATCCTGCAAGAAAACAGTTCCACTTCACCATCTCCAGAACAAGAGGATATGCATAGATCTCTCATGTTGGATAGTTCAACTTCATAATGTGGGCAAATCAATCCCATGTGTGAAGGAGAAAGTCTACCTCAGGGGTCTCTTTCACCGCATTAGAGCTCTCATTGCTTTGAATTGCAACCTAATTTTTGTCACAGATGGATCAATTCCTGCTATTAAATTATCAACTTATAGGCAACGTTTAAACTCTGGAAAAGATGTCGCACAAAATGAAAGCAACTTACATAAAATGTCTTCTTTACCAAGGAACATGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCTCTTGGCATCCCTTGCCTGAATGGGATTGAAGAAGGTGAAGCTCAGTGTGCTTTGTTGAACTCCGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGTCTTGGAGATGGCGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAAGGACTCACTGATTGCTCTTGCCTTGCTTCTTGGGAGTGATTATAGTCAAGGAGTTTACGGTCTAGGTCCGGAGTCAGCTTGTCAGATAGTTAGATCGATTGGGGACAAATGTGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAAGACCGAAAGGTGCAAAGAAGCTGGGGCAAGTTTTCAAGAACAACAACAAAGAAAATATGTTGGACCATGATATGGCATTGAATCAGGGAGGTGAGAACAATTCACAAAGAGATTACAACTTCTTGCTAGTTATCAATGCTTATGTGAAGCCGAAATGCCACCCAGCAGACTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGTAGTAAACTCCAACAGATATGTTCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATATCCTTCCAAAGATAGCTGAAAGGGACTTACGACGATTTGCCAATTTGCGCTTAACTTCATCAGAATTAGGAGCAAATCTTCCATTGAATGAGATCCCTGTAAAGTGTCCTATCTTGGAGATCATTAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTATGAGGTGTCGTGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCAGATCTTTTGAAAAGTGCTTGTCCCGAGAAGATTTTAGAGTTTGAGGAGAAAAAAGGTCGGCTTAAGAAGCAAAATGCTCAAAAGAGAAGGCCAAAGAAAACTGAAGCTGTATCATCTTCTATGGCTGAACTTGACCTGAAACTCACGAATCTGTCACTGGATATCAATCTGGGAGACCATACAAATCACAATGCCTCTGATTTATCAGAACAGGTATTTCAAGATGCAGCTGCCCTGGATGAAGCTCGTTTGAATAACAGAGACTTGCCGTGTTCATCACATGATGAACAGATTGATTGGAATCAGAAGGGTGGTTCGATGGCTAAAGATGAGGTCATTGATTTACTGAGTCCTTCCCCACCTAAGCAGCTGTATGCTTCCTCCAAGTGTCAACAGACTAATGGTGATCGTATCGAGGTGATAAATTTGAGTGATTCGGACAGTGACATGTCACCGGAACATAAGAGGAAAGCACAGGAGCTGAGAATGTTCTTAGCAGGAATAAGGAATGACCTCCATTGA 1770 0.4136 MGVKHLWDILESCKKTVPLHHLQNKRICIDLSCWIVQLHNVGKSIPCVKEKVYLRGLFHRIRALIALNCNLIFVTDGSIPAIKLSTYRQRLNSGKDVAQNESNLHKMSSLPRNMGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGKDSLIALALLLGSDYSQGVYGLGPESACQIVRSIGDKCVLQKFASEGIECLKRPKGAKKLGQVFKNNNKENMLDHDMALNQGGENNSQRDYNFLLVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICSEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSELGANLPLNEIPVKCPILEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKGRLKKQNAQKRRPKKTEAVSSSMAELDLKLTNLSLDINLGDHTNHNASDLSEQVFQDAAALDEARLNNRDLPCSSHDEQIDWNQKGGSMAKDEVIDLLSPSPPKQLYASSKCQQTNGDRIEVINLSDSDSDMSPEHKRKAQELRMFLAGIRNDLH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3534 589 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 201 362 IPR036279 -
Alju02g3534 589 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Alju02g3534 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Alju02g3534 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Alju02g3534 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Alju02g3534 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Alju02g3534 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Alju02g3534 589 Gene3D - 2 199 - -
Alju02g3534 589 Gene3D - 201 267 - -
Alju02g3534 589 MobiDBLite consensus disorder prediction 434 454 - -
Alju02g3534 589 SMART xpgn3 1 97 IPR006085 GO:0004518
Alju02g3534 589 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 525 IPR006084 -
Alju02g3534 589 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Alju02g3534 589 SUPERFAMILY Chromo domain-like 386 436 IPR016197 -
Alju02g3534 589 SMART xpgineu 130 200 IPR006086 GO:0004518
Alju02g3534 589 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Alju02g3534 589 CDD PIN_GEN1 2 198 - -
Alju02g3534 589 CDD H3TH_XPG-like 203 246 - -
Alju02g3534 589 FunFam Flap endonuclease GEN-like 1 200 257 - -
Alju02g3534 589 FunFam flap endonuclease GEN-like 2 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3534 Alju-ChrAlju02 53777483 53783411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3534 1 236 Core DNA Replication Machinery Family AT5G26680 26.744 2.15e-13 70.5