Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3524 ATGAAGACCCAGCGTAGAACAATATCTATTTCAAACTTTCGTATATCGAAGCCCTTGCAGGAAAAGCTAAAGGAGAAAGGCATTGGATATCTGTTTCCCATTCAGGCCAGGACTTTTGATGCCATTCTTGATGGTTCTGATTTGATCGGTCGGGCTCGCACTGGGCAGGGCAAGACATTGGCTTTTGTGTTACCCATATTAGAGTCTTTAACCAATGGTCCAGCTAAAGCATCCAGAAAGGCTAGCCATGGGAGTTCCCCAAGGCCAAGCGTTCTTGTGCTCGTGCCTACGAGAGAATTGGCCTCTCAGGTGTTCTCTGATTTTAAAGCTTATGGTGAGGCACTGGGTTTGATTTCTTGCTGTTTTTGTGGTGGACTTCGAAGTGTAGATCTAGAAGCTAATCTCAATCAAGGTGTTGATATTGCTGTTGGAACACCAGGCCGCATAAAGGTTCATATTGTGAGAGAAACTATTGACCTAACCCAACTAAGGTTCTGTGTCCTTGATGAGTCAGATGTGATCCTGAGGAAGGATTTTGTTGAAGATGTTGAATTCATTCTTGATAAGAAAACCGTTGACCTTGTCGAGAATGAGAAAATAAAGGCTAGCACCAATGTTAGGCATCTTGCTCTTCCATGTAGTTCTGCCACGTCCCAGCTTATCCTAGACATTATTCACCTCTATAGCAGTGGAGGCCGGACAATCATATTTACTGAGACAAAGGAGTCAGCTTCTGAGCTTGCAGGGCTTTTGCCCGGAGCTCGAGCTCTACATGGTGACATACAATTTTTGCACTACGTGAGTGTGAACCTCCACGTGATGCAGATGCCTATATTCATCGTTCTGGCAGCACAGGACGGGCAGGCAATACAGGAGTTGCAATGTCATAAATGCAGTGTGATTCCTCTATTCAAGTCTTCCGCTGAGGAGCTTTTGAACAACTCTGGTTTAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCATGGCTGCTGGTTTTACTGAGATAAAGAGAAGATCGCTTCTTACTTCCACGGAGAATTATGTCACATTACTTCTTGAGACTGCAAGACCCATCTTCGCCCCATCTTCTTGTTACGACACTTACATTTTTGCATCTCAAAGGCTCAAGAAATTTCTGTCTAAGGAGAAGTTTGAGGCAGAGAAGGGTCTTACTCTAACTGCAGATAGAAAAGGCTGTGTCTTTGATGTGCCAGCTAAAGATTTAGATAGATATCTTGCTGGTCAGGAAAATCCTGATAATAAAGCAAGCCTAAAAGTATTAGAATGTGAAAATGTGGCTTTGGCTTCTGATGCTTATTCCATGTTGCCTAGCAAGAAGTTTATTGACATGATGGTCTCTGGTCTCTGGTCTCTGGTCTCTGGTCTCTTAGCTCAAGGGGAAAATGAGGGCAGCATGCTTTAA 1425 0.4379 MKTQRRTISISNFRISKPLQEKLKEKGIGYLFPIQARTFDAILDGSDLIGRARTGQGKTLAFVLPILESLTNGPAKASRKASHGSSPRPSVLVLVPTRELASQVFSDFKAYGEALGLISCCFCGGLRSVDLEANLNQGVDIAVGTPGRIKVHIVRETIDLTQLRFCVLDESDVILRKDFVEDVEFILDKKTVDLVENEKIKASTNVRHLALPCSSATSQLILDIIHLYSSGGRTIIFTETKESASELAGLLPGARALHGDIQFLHYVSVNLHVMQMPIFIVLAAQDGQAIQELQCHKCSVIPLFKSSAEELLNNSGLTAVELLAKALAMAAGFTEIKRRSLLTSTENYVTLLLETARPIFAPSSCYDTYIFASQRLKKFLSKEKFEAEKGLTLTADRKGCVFDVPAKDLDRYLAGQENPDNKASLKVLECENVALASDAYSMLPSKKFIDMMVSGLWSLVSGLLAQGENEGSML 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3524 474 SMART ultradead3 27 228 IPR014001 -
Alju02g3524 474 Pfam DEAD/DEAH box helicase 32 190 IPR011545 GO:0003676|GO:0005524
Alju02g3524 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 190 IPR027417 -
Alju02g3524 474 Gene3D - 346 427 - -
Alju02g3524 474 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 188 - -
Alju02g3524 474 CDD DEADc 19 189 - -
Alju02g3524 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 259 IPR014001 -
Alju02g3524 474 Pfam GUCT (NUC152) domain 332 427 IPR012562 GO:0003723|GO:0004386|GO:0005524
Alju02g3524 474 SUPERFAMILY RNA-binding domain, RBD 336 420 IPR035979 GO:0003676
Alju02g3524 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 261 IPR027417 -
Alju02g3524 474 Gene3D - 1 226 IPR027417 -
Alju02g3524 474 CDD GUCT_RH7_like 339 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3524 Alju-ChrAlju02 53680733 53685595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3524 19 183 Eukaryotic Initiation Factors Gene Family AT3G13920 31.953 9.61e-14 71.2