Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3472 ATGGCTGTAATCAATGCAAACTTTTTTCCTCCTATTCTGATGGTAGCGAAGCAAATGCAAAGGGTTGGGATTGTGAACATATCAAATACCAAAGCGCACCACTTTGAAACCCAACTACCCGGGATTTTGGCTTTACATGTCTTTTTGGATAACAAGATAGCATTGACAACCTCCGTACAAGACAGGCTTGTTTCCACCATTATGGTCCTGATTGGAGGGAAGCCATTGAAGCGGATGAAGACGAGAGTGACGGCTGATTTCTACGACTTCCTCACTTTTCCGCCACCGTCACTTGTCGTGGCAGATGAGCTCTCCGGCAGACCCTTCCGGACAAACGTGCGCTCGTTCCTTTCGAAGCACGCACTGCTCCCACCGCCGTCCGCACTGTTTCCTCACTTGCTGACGTGGCAGATCCTTTTCCGAGTAGGAGACCAGACGGACGGTCCGGACTCAACGCCGTCAGTGGTCTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTTGGAGTGATCACCCAGTATGCAGGAAACGTTACCACTTTATAATCAAGGCTGATGGAAGCTCCATTGGTGGATACCAAAAGCCATGCATGTGCTGTGGAGATACTTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAGCCATGTGACGACTGCTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAAAACACGACCCATCTTTTACATGGTGTTGTCCATGCAAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGAGAGTTCTTTCTGGTTTTCATATCATGAACTTCTGGGATCGTCTCTGCAAGTCACTTGGAGCGAGAGAAGTTAGTGTAATGGATGTTTCAATGAAATATGGGCTGGAGTACCGCCTGATCCATGCTATTACAAAGGGGCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCACTGGTAGCTATGGTCTCACGCATGAAGCATATAAGTCTGCAGTTGAATTCCTTTCCAATCTACCATTGTCCCGATTTCTCTCTGAAGGAAAGAGACCTGATTCTCGATTGCGGGACACAATCTCATATTACCAGTCTTTGTCTGAAACAGGGCTTGTAAATATAAGGGATCTCTTTTGTTTTTTGATTGGTTTGATTCATGATGCTCGCATGACAGTGTCAAGGGCTGATGAAGTCACTTGCAAGAAGCGCCGTTGTAATGCTGCTGGAGTGTCATGTTTCTCATCAATGAGTGACATTGAACGTGTGGAGGGAGCAATGCTCAGAGTGTTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCCGGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCCAGAGCTTCTTGACTACTGTCTCGGAGAACTAGGAGGAAAAGCAATATTTGGGGGTATGGTTGTCAATACCCGATGCAATCCTGTCACTGGAGCTTTAGAGTACAGACTAGAGGCAGGGAACAGCTTTTCCTATGGGACGACAGCAAGCAATAATAACTGTGTGTGTTTGAAGTATCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATGCGAGTCTTTGCTTCATCCACATAAGATGCTAAGCTATGATTCTGAGGAGACAAGGACTGCAGCAATGAGCTATGCTCAGAAACTTCTTGATTGCAAGCATTTTGTAAAAGATTATAGACCTGAGATGGTGCCAATGACAAGCTTGAATAGGATACGCCTCTCGTGTCAGGTAGTACTAGTTGATGAAACTGATGAAGCTTTCGCAAATCCTCCCCCAGAATTAATAGTCCTGCCCTGGAATGCCACTGTGTCCGACCTCAAGACTGAAGCATCAAATGCTTTTCAAGATGTATATCTCATGTGTAAAAGATTTCAAGTTGATGAGCTCTTTGGCTGTAGCAGCGCAGATGATTCCATTCCGGTTAAACTCTTGATAGGATCAACAGAATTGGTTCGTGTCCAAGGAAAATGCATCGGGAAGAATGTATTGAGCAGGTTCCAAAGGGAACGTGGACTTGAGAGGTGGACCGTCGATTGCAGCTGCGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGCGTGTGGGGTGTGGAGGCATACTAGGTGTTCTGGTATTCTTGATGCAGATCCTGTCCCTGTGAGGTTCTTTTGCCCCAGATGCCAAAATTTTGAGTTGAGGCCGTCAAGTGGACACTGA 2256 0.4707 MAVINANFFPPILMVAKQMQRVGIVNISNTKAHHFETQLPGILALHVFLDNKIALTTSVQDRLVSTIMVLIGGKPLKRMKTRVTADFYDFLTFPPPSLVVADELSGRPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDQTDGPDSTPSVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCRKRYHFIIKADGSSIGGYQKPCMCCGDTLHLSESKCKSCSHVTTADDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRVLSGFHIMNFWDRLCKSLGAREVSVMDVSMKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEAYKSAVEFLSNLPLSRFLSEGKRPDSRLRDTISYYQSLSETGLVNIRDLFCFLIGLIHDARMTVSRADEVTCKKRRCNAAGVSCFSSMSDIERVEGAMLRVLRAVSGSNWVSRRTLKGAVCKVASPELLDYCLGELGGKAIFGGMVVNTRCNPVTGALEYRLEAGNSFSYGTTASNNNCVCLKYPSEVNLLHDLRYLCESLLHPHKMLSYDSEETRTAAMSYAQKLLDCKHFVKDYRPEMVPMTSLNRIRLSCQVVLVDETDEAFANPPPELIVLPWNATVSDLKTEASNAFQDVYLMCKRFQVDELFGCSSADDSIPVKLLIGSTELVRVQGKCIGKNVLSRFQRERGLERWTVDCSCGAKDDDGERMLACDACGVWRHTRCSGILDADPVPVRFFCPRCQNFELRPSSGH 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3472 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 744 IPR013083 -
Alju02g3472 751 SMART PHD_3 695 741 IPR001965 -
Alju02g3472 751 SUPERFAMILY FYVE/PHD zinc finger 685 742 IPR011011 -
Alju02g3472 751 ProSitePatterns Uncharacterized protein family UPF0054 signature. 251 261 IPR020549 -
Alju02g3472 751 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 82 747 - -
Alju02g3472 751 Pfam PHD-finger 696 742 IPR019787 -
Alju02g3472 751 CDD PHD_MMD1_like 695 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3472 Alju-ChrAlju02 52964683 52971770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3472 105 740 PHD Transcription Factor Family AT5G22260 29.508 1.67e-82 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju02g3472 PHD 8.7e-09 CL0390