Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3382 ATGTCTTCTGCCGGCGGCGACGGCGGCGGGGTTACCTCCAGCGCTTCTTCTCAATTATATTTTTGCCACCAGTGCAACGCCACCGTATCCATTACGACTTCAACTTCCGCTGATCTTGCTTGTCCCAATTGCAACGGCGGCTTCATTGAAGAAGTCGATAATCCCAGCCCTAATTTTACCAATCCCTTCTTTTCTTTTTCCTCTGAGTTTGGCGGCGGCGGCGGCGGCAGTGCTGGCTTTCCTATAGTATTCTCTACCACTTCAACCGGCAGCGGCAGTGGTGCTGGTGGGCCGATATTCGACGATATTTCCACGCTATTTGGCGGTGGACCTAATCGATCGTCTCCGTTCGGAGAAAATGATGCGTTCAACCCCTTGGCGTTTCTTCAGAACTATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCTAGTGGAACCTTCCGTCTGCCCGCGAATCTCAATTTTGGTGATTACTTCTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACATGGGACGCCCCCAGCCTCGAAATCTGCCATTGAGGGCCTCCCTACTATTAAGATTTCAGAAGAGTTGCTGGCTTCGGATTCATCGCAGTGTGCCGTTTGTAAAGATACATTTGACCTCGCGGAAGAGGTGAAGCAGATGCCATGTAAACATATCTATCATTCAGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGGTTCGAGTTACCAACGGATGATCCTGACTACGAGCAACGTTGTGGGGCTTCTACCCAGGTGATTCGAAATCAATCTGCAAGGGAAGGTGGGTCCGCTGGTTCTTCTGAAGGCGATAATAGCGGCGGCAGCGGTGGCGGTAGTGCAGCATCTGGCCAAGACTCACCGAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAATTGGCTTCCATAGCCGAGACGAGCAGTACTGGAAACGCCAACGTCAGCGGAAATAATAGTGGGGAATCAAATTCTGGAAGAAGTGGAAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGATTAA 1122 0.5027 MSSAGGDGGGVTSSASSQLYFCHQCNATVSITTSTSADLACPNCNGGFIEEVDNPSPNFTNPFFSFSSEFGGGGGGSAGFPIVFSTTSTGSGSGAGGPIFDDISTLFGGGPNRSSPFGENDAFNPLAFLQNYLQTLRAGGANVQFVIENSGDPSGTFRLPANLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEELLASDSSQCAVCKDTFDLAEEVKQMPCKHIYHSDCILPWLELHNSCPVCRFELPTDDPDYEQRCGASTQVIRNQSAREGGSAGSSEGDNSGGSGGGSAASGQDSPRERRFRVSLPWPFRQLASIAETSSTGNANVSGNNSGESNSGRSGNQNFESETRQEDLD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3382 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 266 IPR013083 -
Alju02g3382 373 FunFam E3 ubiquitin-protein ligase RING1-like 180 266 - -
Alju02g3382 373 SUPERFAMILY RING/U-box 198 267 - -
Alju02g3382 373 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Alju02g3382 373 Pfam Ring finger domain 218 260 IPR001841 -
Alju02g3382 373 MobiDBLite consensus disorder prediction 279 310 - -
Alju02g3382 373 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Alju02g3382 373 MobiDBLite consensus disorder prediction 332 363 - -
Alju02g3382 373 CDD RING-H2_RNF126-like 218 260 - -
Alju02g3382 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 264 - -
Alju02g3382 373 SMART ring_2 219 259 IPR001841 -
Alju02g3382 373 MobiDBLite consensus disorder prediction 279 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3382 Alju-ChrAlju02 51724985 51726106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3382 160 272 C3H Transcription Factor Family AT5G01980 50.442 1.81e-35 134