Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3360 ATGTTTTCTTTGTTTGCAGTGCTCATCATGGTAAGAAAAAGGAGAACTGAAGCACCAAGTGGGGGTGAAAGCTCTGAGACTCATGAGAGTGGGGGCACTAGTCGAGGACCTCAACATCATGGTGAAAGAAGTGCTCCATCCCCACAGCAGGCAACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCTCAAGGAGGACGGGGAGGTTATGGTGGGGGCCGGGGCCGTGGGATACCCCAACAGCAGTATGGTGCTCCCCATGAATATCAAGGAATGGGGAGGGGAGGGTACTCTCAGCAGTTAGGTCGTGGACGTGGTGGTGGGGGAAATGGTAGTGGCCGTGGTAGTGGACCTTCTTATGGTGGCCCATCTGGACCTCAAGCTCCCGAGCTGCACCAAGCTACCCTTCTTCCACATCATGCTGGGGTGACTCCAACATCTGAGGCCAGTTCTTCTTCCCAACAGTTTGATCCCTCACAAGTGGAACAACAAATGGGGCAAATGACGATTCATTCAGAAACTGTTTCTCCTGCCCCACCCTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCTGGAAAGGGTAGCTATGGTACCAAGTGTGTAGTTAAGGCTAACCACTTCTTTGCTGAGTTACCTAATAAAGACTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGGTGTCAACCGTGCTGTTATGGAGCAGCTGGTGAGGCTATATCGAGAATCTCATCTGGGTAGGAGACTTCCTGCATATGATGGGCGCAAGAGCCTTTACACTGCGGGTCCTCTTCCTTTCATTTCAAAGGAGTTCAAAATCACTCTCCTTGATGAAGATGATGGATCAGGAGGGACAAGAAGAGAAAGAGAGTTCAAAGTTGTGATAAAAATGGCTGCCCGAGCTGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATTGTGCTGCGCGAATTACCTACCTCTAGGTATTGTCCTGTGGGAAGATCATTCTATTCACCAGATCTGGGTAGAAGGCAACCATTAGGTGATGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGATTATCTCTGAACATCGATATGTCCTCAACTGCATTTATTGAACCATTGCCGGTAATAGATTTTGTTACTCAGTTGCTCAATCGGGATGTCACCTCCCGCCCATTGTCTGATGCAGATCGCGTTAAGATAAAGAAAGCTCTTCGTGGTGTCAAAGTTGAAGTGACACACCGTGGAAATATGAGGAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACTAGAGAGCTTACGTTTCCCGTTGATGCAAGTGGAACAATGAAATCTGTTGTTGAGTACTTTTCGGAAACATATGGATTTGTCATTCAACATACCCAGTGGCCTTGCTTGCAAGTGGGCAATGCGCAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATAGTAGAAGGTCAAAGGTACTCAAAGAGGCTGAATGAAAAGCAGATTACCGCATTGCTCAAAGTCACATGCCAGCGTCCTGTTGAAAGGGAGCGTGACATTATGCAGACAGTTCACCATAATGCTTACCGTGATGACCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTAGCCCAAGTTGAAGCTCGCATCCTTCCTGCACCTCGGCTTAAATACCATGATACAGGTAGGGAAAAGGATTGCCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGTGGGACAGTCAACCACTGGATCTGCATCAATTTTTCCCGAAATGTTCAAGATATTGTTGCAAGTGGGTTTTGTTATGAACTTGCTCAAATGTGCTATATATCTGGCATGGCATTCAGCTCTGAGCCAGTACTTCCCCCGTACAGTGCCCGTCCTGAATTTGTGGATAAGGTTCTCAAAACTCGATATCTTGATGCAAAAGCCAGACTGAAGAAGGATCAACAGCTTGATCTTCTGATTGTTATTTTACCTGATAATAATGGCTCTCTGTATGGTGACCTGAAACGAATATGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACCAAGCATGTCTATAAAATGAGCAAGCAGTATCTTGCTAATGTTGCCTTGAAAATCAATGTAAAAGTAGGTGGAAGGAACACAGTGCTTGTTGATGCACTTTCACGGCGTATACCTCTAGTCAGCGATCGACCAACAATTATTTTTGGTGCTGATGTTACTCATCCACATCCTGGAGAGGATTCAAGTCCTTCCATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAGTCACTAAGTATGCTGGTTTGGTGTGTGCTCAAGCTCATCGACAGGAGCTCATTCAAGACCTCTTCAAACAATGGCAAGATCCATTAAAGGGAATGGCAACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCGGAGGGCCACTGGGCAGAAGCCACAGCGCATTATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAAGTTTTACTGTTTGAGCTTGATGCTATACGCAAGGCATGTGCATCCTTGGAGCCTAATTATCAGCCTCCTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACGAGGCTGTTTGCCAGCAACCATCATGACAGGAGTTTTATTGACCGAAGCGGAAACATATTGCCTGGCACTGTTGTAGACTCTAAAATTTGTCATCCTACTGAGTTTGACTTCTATCTTTGTAGCCATGCTGGGATCCAGGGAACAAGCCGTCCAGCTCATTACCATGTGCTATGGGATGAGAACAATTTTACCGCCGATGCGCTGCAAACATTGACAAACAACCTTTGTTACACATATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCATATTATGCACATTTGGCTGCCTTCCGAGCTCGATTCTATATGGAACCAGAGACGTCAGAGAGTGGGTCTATGACCAGTGGTGTTGCTGCTGCACGTGGAGTTGGTGGAGCAGGGCGGAGCACTCGGCCACCGGGTGGTGGTGGTGCTGTTAGGCCTCTTCCAGATCTTAAGGAGAATGTTAAGAGGGTTATGTTCTATTGTTAA 3180 0.466 MFSLFAVLIMVRKRRTEAPSGGESSETHESGGTSRGPQHHGERSAPSPQQATGGGGSQGGRGWGPQGGRGGYGGGRGRGIPQQQYGAPHEYQGMGRGGYSQQLGRGRGGGGNGSGRGSGPSYGGPSGPQAPELHQATLLPHHAGVTPTSEASSSSQQFDPSQVEQQMGQMTIHSETVSPAPPSSKSVRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGRRLPAYDGRKSLYTAGPLPFISKEFKITLLDEDDGSGGTRREREFKVVIKMAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDASGTMKSVVEYFSETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDIVASGFCYELAQMCYISGMAFSSEPVLPPYSARPEFVDKVLKTRYLDAKARLKKDQQLDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKQWQDPLKGMATGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSFIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMTSGVAAARGVGGAGRSTRPPGGGGAVRPLPDLKENVKRVMFYC 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3360 1059 SMART PAZ_2_a_3 401 533 IPR003100 GO:0005515
Alju02g3360 1059 FunFam protein argonaute 10-like 755 1059 - -
Alju02g3360 1059 Pfam N-terminal domain of argonaute 200 335 IPR032474 -
Alju02g3360 1059 Gene3D - 755 1059 IPR036397 GO:0003676
Alju02g3360 1059 Pfam Mid domain of argonaute 594 668 IPR032473 -
Alju02g3360 1059 CDD Piwi_ago-like 555 1006 IPR045246 -
Alju02g3360 1059 MobiDBLite consensus disorder prediction 146 168 - -
Alju02g3360 1059 Pfam Argonaute linker 1 domain 345 395 IPR014811 -
Alju02g3360 1059 ProSiteProfiles PAZ domain profile. 397 511 IPR003100 GO:0005515
Alju02g3360 1059 SUPERFAMILY Ribonuclease H-like 680 1007 IPR012337 -
Alju02g3360 1059 FunFam Argonaute 10 575 749 - -
Alju02g3360 1059 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Alju02g3360 1059 Pfam Glycine-rich region of argonaut 86 177 IPR024357 -
Alju02g3360 1059 CDD PAZ_argonaute_like 396 510 - -
Alju02g3360 1059 SMART DUF1785_2 344 396 IPR014811 -
Alju02g3360 1059 Pfam PAZ domain 401 527 IPR003100 GO:0005515
Alju02g3360 1059 Pfam Argonaute linker 2 domain 537 583 IPR032472 -
Alju02g3360 1059 Gene3D - 575 749 - -
Alju02g3360 1059 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 177 1008 - -
Alju02g3360 1059 MobiDBLite consensus disorder prediction 1011 1045 - -
Alju02g3360 1059 FunFam Protein argonaute-2 390 516 - -
Alju02g3360 1059 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Alju02g3360 1059 SUPERFAMILY PAZ domain 203 548 IPR036085 GO:0005515
Alju02g3360 1059 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Alju02g3360 1059 MobiDBLite consensus disorder prediction 13 168 - -
Alju02g3360 1059 Gene3D paz domain 390 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3360 Alju-ChrAlju02 51492423 51498309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3360 90 1059 Eukaryotic Initiation Factors Gene Family AT1G48410 80.061 0.0 1586