Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3346 ATGTTAGCCAATAACTCTCTCACTTCCCTTCCTACTCCCGAGCCCTTTCCCTGCGCCGATAATGGCACCATCACGACCAACAAGAGAAAGAGAAGACCCGCCGGAACTCCAGATCCGGACGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTACTGGAATCGGACCGGTACGTGTGCGAGATCTGCAATCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACCGCCGGAGGCACAAGGTGCCGTGGAAGCTCCTCAAGAGGGACACGCCGGCGGCGAGGAAGCGCGTGTTCGTCTGCCCCGAGCCCACGTGCCTGCACCACGACCCCTGCCACGCGCTCGGCGATCTCGTCGGAATCAAGAAACACTTCCGACGAAAACACAGCAACCACAAACAATGGGTCTGTCAACGTTGCTCTAAAGGCTACGCCGTTCAGTCTGATTATAAAGCTCACCTCAAAACTTGTGGCACCAGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCCAGGGTGGAGAGCTTTATCGAACACCAAGATGCTTGTACCATGGGGCGGCTCCGGTCAGAAACACGGCCACTTCAGCAGCAGCCACCGACGGCGTGCCTGTCGCGAACCGCTTCGAGCCCGAGTCCGTCGAGCGAAACCAATTTCAGCACTGGTCTAGTGTTGCCTAATAATAAGCCGACGACGACGGCTGAACCGGCGACAATATTATTGTTGAGCCCTACCATTAATAATAATAATATTAGTGTTGATCATGAAACCTCATCGAGCAACAAGTATAATAAACTGTGTCCAAACTTGGATCTTCGTCTCTCTACCGCCACCTCTACTTCCATGATTCCATCTATTGATACTAATGCTTCGCACCCCAATAAGAGAGATCATGAAAGCCGTTCGAACCACTTTCGGATTTTGATCGGGTCGTCGTCGTCGTCGGAGAAGGGCCAAAAAAATGAATCCAACGGCTGCTTCAATATTATTAATAATCGCAGGAATAATTCACCCAAGGAACGCAGTAACAGCAGCCATAAACCAGAAGGTACTAATGGAGGGATGAGGGTGGTTCATGAAGGAGAAGAAGAAGCTCGAGAGCAATTGAGGTTAGCCATGGCGGAGAAGGCATATGCAGATGAAGCAAGGAAGCAAGCAAAACGACAGATAGAAGTTGCAGAGAAGGAGTTTTCTAATGCAAAAAGCATAAGACAGGAAGCTCAAGCTGAGCTCGAAAAAGCCTACGCCATTAAACAACATGCCATCAAACAGATCAACTCTCTCATGCTTCAAATCACTTGTCATGCTTGTAAACGACAATTTTCAGCCCAAACGACACGCACCACCACCACCACAATGATCACGCCGTTGGCGGTTCCTCCGCCGCCACTGGACGAGAACTCCTTGGCAGTCAGCTACATGTCATCTGCTTTAACAACTGAAGCTGGCGAGGAAGAGAACTACAATAATAATAGTAATGAGAAAAATCGTGGCAAAAACAGTAACTCTTTATCATCTCTCTAG 1521 0.5016 MLANNSLTSLPTPEPFPCADNGTITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDTPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQRCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTMGRLRSETRPLQQQPPTACLSRTASSPSPSSETNFSTGLVLPNNKPTTTAEPATILLLSPTINNNNISVDHETSSSNKYNKLCPNLDLRLSTATSTSMIPSIDTNASHPNKRDHESRSNHFRILIGSSSSSEKGQKNESNGCFNIINNRRNNSPKERSNSSHKPEGTNGGMRVVHEGEEEAREQLRLAMAEKAYADEARKQAKRQIEVAEKEFSNAKSIRQEAQAELEKAYAIKQHAIKQINSLMLQITCHACKRQFSAQTTRTTTTTMITPLAVPPPPLDENSLAVSYMSSALTTEAGEEENYNNNSNEKNRGKNSNSLSSL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3346 506 Gene3D Classic Zinc Finger 35 99 - -
Alju02g3346 506 SMART c2h2final6 98 128 IPR013087 -
Alju02g3346 506 SMART c2h2final6 134 161 IPR013087 -
Alju02g3346 506 SMART c2h2final6 57 79 IPR013087 -
Alju02g3346 506 FunFam protein indeterminate-domain 12-like 36 104 - -
Alju02g3346 506 MobiDBLite consensus disorder prediction 282 301 - -
Alju02g3346 506 Coils Coil 375 423 - -
Alju02g3346 506 MobiDBLite consensus disorder prediction 310 337 - -
Alju02g3346 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Alju02g3346 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 484 IPR031140 -
Alju02g3346 506 MobiDBLite consensus disorder prediction 1 43 - -
Alju02g3346 506 MobiDBLite consensus disorder prediction 310 356 - -
Alju02g3346 506 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Alju02g3346 506 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Alju02g3346 506 MobiDBLite consensus disorder prediction 190 230 - -
Alju02g3346 506 MobiDBLite consensus disorder prediction 479 506 - -
Alju02g3346 506 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3346 Alju-ChrAlju02 51356827 51359988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3346 4 478 C2H2 Transcription Factor Family AT1G25250 44.813 5.46e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g3346 zf-C2H2 0.0049 CL0361