Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3339 ATGAAGTTGTTGCTGGCTTGCGCTCTTTTCCACTGCTCCTCAGTTCTCACCGTTAGAAGAAAAAAAAAGCTTGAAACAATGGAAACCACCACGACGATGAGAAGACAAGATGAAGAAGACGACGATGAAGAAGAGTGCAACGCCGCCGCTAGGAAGCAGCCACGCAACAGATTTCGATTTCGGTCTCGTTTCGATTTGTGTTTCGCCGATCCCGATTCCAGTTGGCGAGCCGGCACCTCCGCCCCCTGCGGCGGCGCCACCCCTAATCTCCCCCGCCGGTTCCTCATTCATCCAGATAACGGATGGTACTTCTTGTGGAAGCATTTCATTCTGATCTGGGCAGTGTACTCTTCCTTCTTCACTCCTCTGGAGTTTGGATTCTTCAGAGGATTGCCGGAGGAAGTCTTCTTGCTCGACATCGCCGGCCAGTTTGCTTTCCTCGTTGACATCGCCGTCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATGGTCTACGATCACACTCAGATTGCCAAAAGGTACCTGAAGTCTCGGTTCACAGTTGATATTCTTAGCTGTCTTCCGTGGGATTATATCTACAAGGCTACTGGAAGGAAAGAAGCTGTCAGGTATTTTTTATGGATTAGGTTAAGTCGAGCTTGTAGAGTGACCGAGTTTTTTGAGAGGCTGGAGAAAGATATTAGGATCAATTACCTCTTTACCAGGATCGCTAAACTTCTTGTTGTAGAACTTTATTGCACTCACACAGCTGCTTGTATCTTTTACTATCTTGCCACCACTTTGCCTCCATCAAACGAAGGTTATACATGGATAGGCAGCTTAAAGATGGGTGATTATAGCTATTCAGACTTTAGACATATCAATCTTTGGAAGCGTTATGTGACATCACTCTACTTTGCAATTGTGACCATGGCAACTGTTGGCTATGGGGACATTCATGCTGTCAATGTCAGGGAAATGATATTTGTCATGATTTATGTCTCCTTTGATATGATTCTTGGTGCTTACCTTCTTGGTAATATGACAGCATTGATTGTGAAAGGATCTAAAACAGAGAGGTTTAGGGATAAAATGGCTGATATTATTAAGTTCATGAATAAAAACAACTTGGACAAGCAGATAACCAAAGCAATAAAACGACATTTACGCTTACAGTATGATCGCAGTTACACTGAGGCTGCTGTGCTTCAGGATATTCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGAGCAATTTATACAAAAAGTTCCTCTTTTCAAGGGATGCTCTTTGGGGTTCATCAAGCAAATTGCAATCAGAGTCCATGAAGAGTTTTACCTTCCAGAAGAAGTTATTATGGAGCAAGGAAATGTAGCCAATCAACTTTACCTTGTATGTGATGGCGAGCTGGTTGAGATGAGGACAGAAGATGTTGATAAAGAAGTGTTCATAAAGCATTTGCAAATCTACTGTTCCTTTGGCGAGGTTTCTTTTCTTTGTGATATACCTCAACCTTCAACTATACGAGCGCTTGAATTTTGCAAGGTTTTGCGACTTGATAAGCATTCCTTTATGGAAACACTGAAGTTATATTTTGCAGATGGTCGAGTTATCTTGAACAATTTCCTTGAGGGAAAAGACTCCAGTCTTCAGCAGAAGCTCCTGCAATCCAACTTCTCCTTGACTCTTGAAAACCCTGAAATAGAGATGGTTATGAGAATGAATTGTGCTGCATATGAAGGGGACATTAACTTTTTGAAACGCTTGATGGAATCAGGAGCAGATCCCAACAAGACTGGTTATGATGGTCGATCACCCTTGCTTATTTCAGCATCGGAAGGACGTGTAGAAATTGTTCGCTTTCTTATTGAACATGGAGTGATTATCAATTTCACTGACAAATTTGGGAACTCCCCCTTGTTGGAATCCATCAAGAATGGACATGAAGAAGTAGCTTCTTTACTTGTGGAGGCGGGGGCTACTCTTACTGTGGATCATGCTGGGAATTTTCTCTGCATGACTGTTGCCAAGAAGGAGTTGAGCCTTTTAAGACGGGTCTTGGATTACAGTATTAATCCGAACGCCAGAAATTATGATCAGCGTACAGCTCTTCACATTGCTGCCTCTGAAGGTTTGTGTAAAATGGCTGAGTTGCTTCTAGATGCAGGAGCAAGTGTTTTATCAAAGGACAGATGGGGAAATACACCGCTTGATGATGCTCATATGGGCGGAAATAGGAACATGATCAAAATGCTTGATGTTGCAAAAATTTCTCAGTTGACTGAATTATCTCACAATATGCAAAAACCTCGAGCAAAGGTGCTATTACCATCAAGAGATGAGATTCTAAGAAAGAAATGCAATGTATTTCCTTTCCATCCATGGGATCAAAAAGTGGATAGAAGAGAGGGAATTGTCTTATGGGTTCCAAAAAGCATTGAAGAACTTGTGCAGTTGGCCATGAAATATCTGAACTCTTCAAGCGGTTCCTGTATTTTATCAGAACATGGGTGTAAAATTCTCGACGTAGACATGATTAGCAATGGTGAGAAGCTATTTCTGGTGAGTGAAGAACAATCAGAGAGTTCATAG 2589 0.4214 MKLLLACALFHCSSVLTVRRKKKLETMETTTTMRRQDEEDDDEEECNAAARKQPRNRFRFRSRFDLCFADPDSSWRAGTSAPCGGATPNLPRRFLIHPDNGWYFLWKHFILIWAVYSSFFTPLEFGFFRGLPEEVFLLDIAGQFAFLVDIAVRFFVAYRDIHSYCMVYDHTQIAKRYLKSRFTVDILSCLPWDYIYKATGRKEAVRYFLWIRLSRACRVTEFFERLEKDIRINYLFTRIAKLLVVELYCTHTAACIFYYLATTLPPSNEGYTWIGSLKMGDYSYSDFRHINLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMADIIKFMNKNNLDKQITKAIKRHLRLQYDRSYTEAAVLQDIPASIRAKISVNLYEQFIQKVPLFKGCSLGFIKQIAIRVHEEFYLPEEVIMEQGNVANQLYLVCDGELVEMRTEDVDKEVFIKHLQIYCSFGEVSFLCDIPQPSTIRALEFCKVLRLDKHSFMETLKLYFADGRVILNNFLEGKDSSLQQKLLQSNFSLTLENPEIEMVMRMNCAAYEGDINFLKRLMESGADPNKTGYDGRSPLLISASEGRVEIVRFLIEHGVIINFTDKFGNSPLLESIKNGHEEVASLLVEAGATLTVDHAGNFLCMTVAKKELSLLRRVLDYSINPNARNYDQRTALHIAASEGLCKMAELLLDAGASVLSKDRWGNTPLDDAHMGGNRNMIKMLDVAKISQLTELSHNMQKPRAKVLLPSRDEILRKKCNVFPFHPWDQKVDRREGIVLWVPKSIEELVQLAMKYLNSSSGSCILSEHGCKILDVDMISNGEKLFLVSEEQSESS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3339 862 Pfam Ankyrin repeats (3 copies) 575 663 IPR002110 GO:0005515
Alju02g3339 862 PANTHER POTASSIUM CHANNEL AKT1 81 858 IPR045319 GO:0005249|GO:0006813
Alju02g3339 862 FunFam Potassium channel SKOR 104 349 - -
Alju02g3339 862 SUPERFAMILY Voltage-gated potassium channels 98 349 - -
Alju02g3339 862 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Alju02g3339 862 Pfam Ankyrin repeats (many copies) 688 737 IPR002110 GO:0005515
Alju02g3339 862 Pfam Ion transport protein 104 348 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju02g3339 862 FunFam Potassium channel KAT2 412 548 - -
Alju02g3339 862 PRINTS EAG/ELK/ERG potassium channel family signature 296 313 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju02g3339 862 PRINTS EAG/ELK/ERG potassium channel family signature 507 515 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju02g3339 862 PRINTS EAG/ELK/ERG potassium channel family signature 248 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju02g3339 862 PRINTS EAG/ELK/ERG potassium channel family signature 340 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju02g3339 862 PRINTS EAG/ELK/ERG potassium channel family signature 139 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju02g3339 862 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Alju02g3339 862 Gene3D Jelly Rolls 412 532 IPR014710 -
Alju02g3339 862 SUPERFAMILY cAMP-binding domain-like 352 541 IPR018490 -
Alju02g3339 862 ProSiteProfiles Ankyrin repeat region circular profile. 601 633 - -
Alju02g3339 862 Pfam Cyclic nucleotide-binding domain 444 528 IPR000595 -
Alju02g3339 862 Gene3D - 105 350 - -
Alju02g3339 862 Gene3D - 674 753 IPR036770 -
Alju02g3339 862 ProSiteProfiles Ankyrin repeat region circular profile. 698 730 - -
Alju02g3339 862 CDD CAP_ED 424 538 IPR000595 -
Alju02g3339 862 ProSiteProfiles Ankyrin repeat profile. 698 730 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 568 597 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 698 727 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 731 761 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 634 663 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 601 630 IPR002110 GO:0005515
Alju02g3339 862 SMART ANK_2a 665 694 IPR002110 GO:0005515
Alju02g3339 862 Gene3D Helix hairpin bin 352 411 - -
Alju02g3339 862 Gene3D - 563 673 IPR036770 -
Alju02g3339 862 SMART cnmp_10 424 542 IPR000595 -
Alju02g3339 862 Pfam KHA, dimerisation domain of potassium ion channel 784 853 IPR021789 -
Alju02g3339 862 ProSiteProfiles Ankyrin repeat region circular profile. 634 663 - -
Alju02g3339 862 ProSiteProfiles cAMP/cGMP binding motif profile. 424 544 IPR000595 -
Alju02g3339 862 ProSiteProfiles KHA domain profile. 785 862 IPR021789 -
Alju02g3339 862 SUPERFAMILY Ankyrin repeat 572 751 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3339 Alju-ChrAlju02 51278475 51293472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3339 34 730 Ion Channels AT5G37500 56.606 0.0 825