Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3308 ATGTGTGGAGGTGCTATCATCTCCGATTTCGTCCCTCCCAAACCTGGTGGTCGGAAATCGACCACCACCAACGACTTCTGGTCGGACCTTGAAACCTTCGCTGACCTCCTAGGATTCCATTCCTCTGCTCTTTCTCCCCATCACCACAAGCCAGCTGTTGCTTCCCCTGATGATCAGAATCTCCCTCCCATCCCAACTGCAGTGACATGTGAGAATAATAACAAAAATGACAATACCAACAACAACAAGAAGAAGCCGGAGAAGAAAAGTGGAGGTGGAGGAAGGACTCGCAAGAACATTTACAGAGGAATCCGGCAAAGGCCGTGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAGGGCGTCCGAGTCTGGCTCGGCACCTTCAACACAGCCGAAGAAGCCGCCAGAGCCTACGACCAAGCCGCCAAGCGCATCCGCGGTGACAAAGCCAAGCTCAACTTCCCACAGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCCGTGGAGCCGCCTCAGAAGAAGCAGTGTCTCACCCCTGGCCACAACGACGACGCCGTTCAGCTCAACCAACAACAAATCTCAACCATCGAATCCTTCCTCGGTCTGGACGAGGACAACAACAAGAAGAACAACACTACTTATGGTATTTCGCAGCTGATCGGAGCAGCCGCAGGCAGTGGCAGCGTACTCTCTGAGTTGGACCCCATGGACGATCTCTGGATGCTCAACGACGTCGTTATGCATCACCTGCATCATCATAACGGTCACTTCTAG 777 0.5495 MCGGAIISDFVPPKPGGRKSTTTNDFWSDLETFADLLGFHSSALSPHHHKPAVASPDDQNLPPIPTAVTCENNNKNDNTNNNKKKPEKKSGGGGRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDQAAKRIRGDKAKLNFPQAPAPAPAPAPVEPPQKKQCLTPGHNDDAVQLNQQQISTIESFLGLDEDNNKKNNTTYGISQLIGAAAGSGSVLSELDPMDDLWMLNDVVMHHLHHHNGHF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3308 258 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 MobiDBLite consensus disorder prediction 78 94 - -
Alju02g3308 258 PANTHER DNA-BINDING DOMAIN 60 190 IPR044808 GO:0003700|GO:0009873
Alju02g3308 258 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Alju02g3308 258 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 MobiDBLite consensus disorder prediction 158 183 - -
Alju02g3308 258 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Alju02g3308 258 CDD AP2 100 156 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g3308 258 MobiDBLite consensus disorder prediction 159 173 - -
Alju02g3308 258 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Alju02g3308 258 Pfam AP2 domain 101 149 IPR001471 GO:0003700|GO:0006355
Alju02g3308 258 MobiDBLite consensus disorder prediction 46 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3308 Alju-ChrAlju02 50906706 50908445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3308 1 250 AP2-EREBP Transcription Factor Family AT3G16770 40.690 1.98e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju02g3308 AP2 4.6e-15 CL0081