Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3288 ATGAATCCGAGCAACTGCAAGGGATCTATGTCAACAGTTAGCTCTCCTGCGGTTTCCAAGTCCGGTGACATCGTCTCCGATCAGTTTCCGGTGGATCTCCGGGTACTGGTGGTGGATGATGATCCCACGTGCCTTATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACAAAGTTACGAAATGCAATCGAGCAGAGATTGCGCTTTCACTTCTGAGAGAGAACAAAAATGGGTACGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTAGAGCACATTGGGTTAGAGATGGACCTTCCCGTCATTATGATGTCTGCAGATGATGGAAAGAATGTTGTTATGAAAGGTGTGACTCACGGTGCTTGTGATTACCTTATCAAACCTGTGCGCATCGAGGCTCTAAAGAATATTTGGCAACATGTGATTCGTAAGAGGAAGAATGAACGGAAGGATTTGGAGCAGTCAGGTAGTGCAGAAGAAGGAGATCAGAAACAAAAGCCAACTGATGAGGTGGATTACTCATCCTCTGCAAACGAAGGCAATTGGAGAAGCGCAAAGAAGAGGAGGGATGAGGATGAAGAAGCAGAGGAGAGGGATGACTCATCCACATTAAAGAAGCCACGAGTTGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTGAATCAGCTTGGAATTGATAAGGCAGTTCCTAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTTCGTAGGTTGAGTGGAGTTTCTCAACATCAGGGTAACCTGAATAACTCTTTCATCAGCTCACAAGAGGCAACTTTTGGGGCAATTTCTTCACTCAGTGGAACGGAACTTCAAACTCTTGCTGCTGCAGGTCAGCTTCCACCACAAAGTCTAGCAACACTTCAAGCAGCAGGACTGGGTAGGTCAAATGCAAAAACTGGTATACCCATGCCCCTTGTTGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTCGGAGAAGGACAACAGCAATATGGGAGCAGTAGTAAGCCAATGAACTTACTTCACGGTATCCCTACCAACATGGAGCCAAAGCAGCTTGCTTCTCTGCACCAATCTACTCAACCCCTGGGGAGCTTGAATATGCGAGTCAATGCTTCTCCTTCCCAGAGCAACCCCTTATTAATGCAGATATCTCAATCACAACCAAGGGGTCATATGCTTAATGAACTTAATGTGCCTCATGTTCCCAGGCTTCCAACATCTATGGGGCAGTCTTCAGTATCAAATGGGTCTCCCAGTAGTGTTCTGGGAAGAAATGGTATTTCTGATGATGGTAGAGGAGTTGCATATAGTTCAGTTCCGCAAACCTCTTCAATGTTGAACTTTCCCATGAGCCAAACCACAGAAATGCCTGCAGGTAGTTTTCCTCTTGGAAACACTCCAGATATGTTAAGTATCACATCAAAAGGAGTTTACCAAGATGGAGGTTCTTCAGGAATGAAAGGGTCTTCTGGATTTGCTCCAAGTTACGATATCTTTAATGAACTGCACCAGCATAAGTCCCGTGAATGGGAAGTACAAAACATGGGCCAGAACCCGACATATGATGCCTCTCAGAATGCAAATCCCTTACAAGGCAACATTGATGTCTCACCGTCAGTTCTAGTCCATCAAGGTTTCTCTTCCAACCAACAACGGATGGGACAGAATAGAGATGCTACTTCGGTTGGAAAAGCTATGTTCTCCCTAGGGGAAGGCATGCAGTCAGCTAATTTCCAGAATATTGGTCAACATCAGGGTTTCCAAAATACGCTTCTTACTGAAAATTCAGCAAGGGTTAAGGCTGAAAGAATTCCTGATGCTAACTCTCAGACTAACCTCTTCCCTGAGAACTATGGGCAGGAGGATCTCATGAGCGCACTTCTGAAACAGCAAGAAGGCATTGGACTAGCCGAGAACGAGTTTGATTTTGATGGATATTCCATGGACAACATCCCTGTCTAG 2058 0.4475 MNPSNCKGSMSTVSSPAVSKSGDIVSDQFPVDLRVLVVDDDPTCLMILEKMLRTCLYKVTKCNRAEIALSLLRENKNGYDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNERKDLEQSGSAEEGDQKQKPTDEVDYSSSANEGNWRSAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNNSFISSQEATFGAISSLSGTELQTLAAAGQLPPQSLATLQAAGLGRSNAKTGIPMPLVDQRNLFSFENPRLRFGEGQQQYGSSSKPMNLLHGIPTNMEPKQLASLHQSTQPLGSLNMRVNASPSQSNPLLMQISQSQPRGHMLNELNVPHVPRLPTSMGQSSVSNGSPSSVLGRNGISDDGRGVAYSSVPQTSSMLNFPMSQTTEMPAGSFPLGNTPDMLSITSKGVYQDGGSSGMKGSSGFAPSYDIFNELHQHKSREWEVQNMGQNPTYDASQNANPLQGNIDVSPSVLVHQGFSSNQQRMGQNRDATSVGKAMFSLGEGMQSANFQNIGQHQGFQNTLLTENSARVKAERIPDANSQTNLFPENYGQEDLMSALLKQQEGIGLAENEFDFDGYSMDNIPV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3288 685 FunFam Two-component response regulator 209 272 - -
Alju02g3288 685 Gene3D - 33 171 - -
Alju02g3288 685 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Alju02g3288 685 MobiDBLite consensus disorder prediction 1 20 - -
Alju02g3288 685 FunFam Two-component response regulator 33 170 - -
Alju02g3288 685 SMART REC_2 33 145 IPR001789 GO:0000160
Alju02g3288 685 Gene3D - 210 272 - -
Alju02g3288 685 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Alju02g3288 685 PIRSF RR_ARR_type-B 13 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Alju02g3288 685 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Alju02g3288 685 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Alju02g3288 685 CDD REC_typeB_ARR-like 35 149 - -
Alju02g3288 685 MobiDBLite consensus disorder prediction 189 210 - -
Alju02g3288 685 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Alju02g3288 685 MobiDBLite consensus disorder prediction 155 210 - -
Alju02g3288 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 317 IPR045279 GO:0009736
Alju02g3288 685 SUPERFAMILY CheY-like 33 159 IPR011006 -
Alju02g3288 685 MobiDBLite consensus disorder prediction 155 176 - -
Alju02g3288 685 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3288 Alju-ChrAlju02 50581894 50585169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3288 67 685 Response Regulator Gene Family AT3G16857 48.640 2.35e-172 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju02g3288 Response_reg 1e-22 CL0304