Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3273 ATGATGGCAAATAACTTAACGGGGCAGCTCTTGGGCTCAGAGATACATGGATTCCATACAATGCAGGAGTTAGATGTTGGAACTATTATGGAGGAAGCAAGATGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGCAATTACAAACATTTTATCATCCATGTCAAGCCAGTGACTTTGCCCAAAAGTGGCACTATTGTATTATTTGATAGGAAGAAGCTGAGGAACTTTCGTAAAGATGGACACAATTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATACTATGCACATGGTGAAGAAAACTCAAACTTTGTTCGCAGATGTTATTGGTTGCTCGATAAGAGTCTGGAGCATATTGTCCTTGTTCATTATCGTGAAACACAGGAGCCACAAGGTTCTCCAGCCACACCTGTACATTCAACTGCTAGTTCTCCCTCTGATCCAACAACACCATGGGTATTATCAGAAGAATTAGATTCTGGGATCAACAAGGCATGCGGTGGTGAGCTGAACGGCAATTTAACAGTCAAAAGTCATGAAATGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTACAAGTGATCTTACCACCGCTACTACCTCCACTCCTACTGGAGGAAAGGTTCCATGTTTTCATCAAGAAAAACAAATTTCACTGAATGGAAATTCGAGCAGGGTAGTCAACAATCAATCTGCAGAAATGCATTCTTTTGATATTCTGAACAATTCAATTGATGGGAACAATAGTGCTCGATACAATTTTCCTGAAAGTTCGAATCTTCAGACTGCCAACTGTCAAGTAAATTCAAATGAAAAGAGTGAACATTCTATCACCAATGACAGTATCATCAATGACACTCTGCAAAGCCAGGACAGCTTTGGAAATTGGATAAGCCATATGATGGCTGATTCACCATGTTCTATTGATGACTCAGGTCTTGAATCCTCAGTTTCATCTGTTCATGATTCATACTCTTCAGGATTGGATAGTCATCAATCTCCTCTGCCAGAACAATTATTTAATATCACTGATGTGGCTCCTGTCCGGGCATGCTCTACTGAGAAAACAAAGGTCCTAATAACTGGATTTTTTCGTGATGACTATATGCACCTTGCGAAGTCCAATCTGTTTTGTATCTGTGGGGATGTATCTGTTCCTGCAGAAATTGTTCAAGTTGGTGTCTACCGATGCTGGGTACCACCACATTCCCCTGGTTTTGTGAATCTCTCTATGAGTTTTGATGGCCATAAGCCCATAAGTCAAGTTGTTAATTTTGAGTATCGTACTACTGTTTGGCAAGACTCTGCAGCTTCCGTTGAAGAGAGGTACAACTGGGAGGAGTTCCGACTTCAAATGAGGCTTGCATATTTGCTCTTTGCTACACAAAAAAGTCTTGACATTACCTCTAGCAAAGTTTCGCCTGATGCACTGAAGGAGGCTAAAAAATTTGTCTTCAAGACATCATATATTTCTAAAAGTTGGCAATACTTGATTAAGTCTACTGAAGACCATAAAACTCCATTTCCACAAACAAAAGATGCCTTGTTTGAAATTGCATTGAAGACTAAACTAAAGGAATGGCTGTTGGAGAGAATTATTTTAGGCTGTCAGACTACTGAATTTGATGCCCAAGGTCAAGGTGTAATCCACTTATGCTCGATTTTAGGATATACATGGGCTGTTTCAATATTTTCATGGTCTGGTTTTTCATTGAATTTCCGTGATAAATTTGGATGGACAGCCCTGCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTTGCTGCTCTATTGTCTGCAGGGGCAAGGCCGAATTTGGTCACGGATCCTACTCCTCAACATCCTGGTGGTTTTACTGCAGCTGATCTGGCTCAGATGAAAGGTTATAATGGCTTAGCAGCTTACCTTTCGGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCATCGCAGGAAATATCAGTGGCTCGCTGGAAACTGTTAGCACAAGTGATCCAGTAAATTCTGAGAAGATCAATGAGGATCAACTGTATATGAAGGATACATTAGCAGCTTACAGGACCGCTGCTGAGGCTGCAGCACGCATACAAGCTGCATTTAGGGAGCATTCACTAAAATTACGATCTCATGCAGTTGAACTTTTCAGTCCGGAGGCTGAAGCACGCCAAATAGTTGCAGCAATGAGGATCCAGCATGCTTTTAGAAACTTCGAGTCGAGGAAGTCTATGGCGGCTGCTGCTCACATCCAGCATACCTTCCGTATGTGGAAGATGCGTAGAGAATTTCTCAATATGCGTCGCCAGGCAATCAAGATTCAGGCTGCTTTCCGGGCCTTTAAGGAGCGGAAGAACTACCGCAAAATCATCTGGTCTGTTGGAGTGGTTGAGAAAGCAATCCTGCGGTGGCGTTTAAAGAGAAAGGGCTTCCGTGGCCTACGTGTAAATCCTGTTCAAGAAGTGGTAGGTCAGAAGGAGGAAACAGAGTTTGTTACAGAGGAGGACTTTTTCCGGACAGGCAGGAAACAAGCTGAAGAACGTGTTGAGAGAGCTGTAGTACGTGTTCAAGCCATGTTCCGCTCTAAGAAAGCACAAGTAGATTACAGGAGGATGAAACTAACCCATAATCAAGCAAGGCTGGAACTAGAATATGAAGAACTCCTCAATTCTGAGGTTGATATGGGAGTGAAGACATAG 2766 0.4215 MMANNLTGQLLGSEIHGFHTMQELDVGTIMEEARCRWLRPNEIHAILCNYKHFIIHVKPVTLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEENSNFVRRCYWLLDKSLEHIVLVHYRETQEPQGSPATPVHSTASSPSDPTTPWVLSEELDSGINKACGGELNGNLTVKSHEMRLHEINTLEWDDLVVTSDLTTATTSTPTGGKVPCFHQEKQISLNGNSSRVVNNQSAEMHSFDILNNSIDGNNSARYNFPESSNLQTANCQVNSNEKSEHSITNDSIINDTLQSQDSFGNWISHMMADSPCSIDDSGLESSVSSVHDSYSSGLDSHQSPLPEQLFNITDVAPVRACSTEKTKVLITGFFRDDYMHLAKSNLFCICGDVSVPAEIVQVGVYRCWVPPHSPGFVNLSMSFDGHKPISQVVNFEYRTTVWQDSAASVEERYNWEEFRLQMRLAYLLFATQKSLDITSSKVSPDALKEAKKFVFKTSYISKSWQYLIKSTEDHKTPFPQTKDALFEIALKTKLKEWLLERIILGCQTTEFDAQGQGVIHLCSILGYTWAVSIFSWSGFSLNFRDKFGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTPQHPGGFTAADLAQMKGYNGLAAYLSEKSLVEQFNDMSIAGNISGSLETVSTSDPVNSEKINEDQLYMKDTLAAYRTAAEAAARIQAAFREHSLKLRSHAVELFSPEAEARQIVAAMRIQHAFRNFESRKSMAAAAHIQHTFRMWKMRREFLNMRRQAIKIQAAFRAFKERKNYRKIIWSVGVVEKAILRWRLKRKGFRGLRVNPVQEVVGQKEETEFVTEEDFFRTGRKQAEERVERAVVRVQAMFRSKKAQVDYRRMKLTHNQARLELEYEELLNSEVDMGVKT 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3273 921 SMART ANK_2a 601 630 IPR002110 GO:0005515
Alju02g3273 921 SUPERFAMILY E set domains 365 452 IPR014756 -
Alju02g3273 921 SMART iq_5 746 768 IPR000048 GO:0005515
Alju02g3273 921 SMART iq_5 788 810 IPR000048 GO:0005515
Alju02g3273 921 SMART iq_5 769 787 IPR000048 GO:0005515
Alju02g3273 921 SMART iq_5 870 892 IPR000048 GO:0005515
Alju02g3273 921 SMART CG_1_2 29 147 IPR005559 GO:0003677
Alju02g3273 921 ProSiteProfiles IQ motif profile. 789 813 IPR000048 GO:0005515
Alju02g3273 921 Pfam CG-1 domain 33 145 IPR005559 GO:0003677
Alju02g3273 921 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Alju02g3273 921 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Alju02g3273 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 899 - -
Alju02g3273 921 MobiDBLite consensus disorder prediction 146 170 - -
Alju02g3273 921 SUPERFAMILY Ankyrin repeat 548 663 IPR036770 -
Alju02g3273 921 Gene3D Immunoglobulins 360 455 IPR013783 -
Alju02g3273 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 816 IPR027417 -
Alju02g3273 921 Pfam IQ calmodulin-binding motif 791 810 IPR000048 GO:0005515
Alju02g3273 921 ProSiteProfiles Ankyrin repeat region circular profile. 601 629 - -
Alju02g3273 921 Gene3D - 765 813 - -
Alju02g3273 921 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Alju02g3273 921 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Alju02g3273 921 Pfam Ankyrin repeats (3 copies) 551 630 IPR002110 GO:0005515
Alju02g3273 921 Gene3D - 527 670 IPR036770 -
Alju02g3273 921 MobiDBLite consensus disorder prediction 148 170 - -
Alju02g3273 921 Coils Coil 893 913 - -
Alju02g3273 921 FunFam calmodulin-binding transcription activator 5 531 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3273 Alju-ChrAlju02 50361538 50371030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3273 29 904 CAMTA Transcription Factor Family AT3G16940 53.584 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Alju02g3273 Ank_2 2.4e-06 CL0465