Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3248 ATGACAGGCTCATCATCCAGAAATGTTCTGAAGCCGATGCGAGAAAGAGCAAAGAAGACGAGCTTTGTGATGAGAAAAGTTCGAGTGATTTACACAGACCCAGATGCTACAGATTGTTCGAGCGAAGAAGAAGAAGAAGAAGAAGGTGATGGATCTTTGAAGATCATCAATGGCTGCAAGAGATTTGTTAAGGAGATTATTGTTCCGACCAAATTATGCGCTTCAGTAGTGGGTCCCAGTTTTGTGGGCAGCACTAGCAATAATAATAAGGGGACGAATCGTAGGAAATCGTCGGGCTTGCCGAGAGGAGTACGACGTCGTAAATGGGGGACCTACGTGGCGGAGATCCGAGACCCGTTTCGCAGGACCCGAATGTGGCTTGGAACTTACAACACTGTGGAGGAAGCTGTTTTGGCTTATGAGAAGAAGAAAAAGGAATTTGAAAGCTTCATGTCTGTTCCATCTCCATCATCTGTGCTTGACGTCACCCCAAATAATAACAATAATAATATTATTAATAATTCATTGGGGAGTAACACAGACGATTCTTCTGTGAAAGCAGAACAGTATGAGGAAGGAGAAGAAGAAGAAGGGTTCATTCAACAGTTACTAAAGGAGACAATTGTGCCATCACTGGAGGATGATAGAGAAATGGTGTTTTTTGTTGGTTTTGCGGATAATAATTTGGTCAATAATAATTGTAATAATAATAATGATGCTAATAATGGAGGTTTAATCTGCCTTGACGGTGAAAAGGAAGAAGGTGAGGGAAGAAGCAGTGTTCCATTAATATCTGTTGAGAGTGATTCAAGTGATGTAGAGTTAGGTTGGATTGATGAAGCTTTCAATGATGATGAATGGTTAGAAAGCTTTTAA 876 0.4087 MTGSSSRNVLKPMRERAKKTSFVMRKVRVIYTDPDATDCSSEEEEEEEGDGSLKIINGCKRFVKEIIVPTKLCASVVGPSFVGSTSNNNKGTNRRKSSGLPRGVRRRKWGTYVAEIRDPFRRTRMWLGTYNTVEEAVLAYEKKKKEFESFMSVPSPSSVLDVTPNNNNNNIINNSLGSNTDDSSVKAEQYEEGEEEEGFIQQLLKETIVPSLEDDREMVFFVGFADNNLVNNNCNNNNDANNGGLICLDGEKEEGEGRSSVPLISVESDSSDVELGWIDEAFNDDEWLESF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3248 291 SMART rav1_2 102 169 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 CDD AP2 102 140 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 ProSiteProfiles AP2/ERF domain profile. 100 163 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 Gene3D AP2/ERF domain 102 150 IPR036955 GO:0003700|GO:0006355
Alju02g3248 291 MobiDBLite consensus disorder prediction 83 103 - -
Alju02g3248 291 SUPERFAMILY DNA-binding domain 101 147 IPR016177 GO:0003677
Alju02g3248 291 Pfam AP2 domain 102 148 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Alju02g3248 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3248 Alju-ChrAlju02 50028311 50029186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3248 13 152 AP2-EREBP Transcription Factor Family AT1G68550 38.158 2.10e-24 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju02g3248 AP2 3.4e-09 CL0081