LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g3242	ATGGAGAAGAAGACGTCAGAAAACGAAGTTGTTCTGCAAATCCAAGAAAAGGAAGAAGCTTCTTCGTACACGACGACTAAAGAATCCCAGATGGATTCTTCACCGGATATAAGAAATGTTAGTCCAAGTCCCGGCAAGCCCCCAAAAATTCCGACAGAAACATTAATCAAACGAAGGTCACTGTCAAGGTCGGAGTTCTCGAAGCCAAAATCCAGATTATTGGAGCCGCCATATCAGGCTCACCCCAAATTTCTCGAAGCAAAAACTCAAATGGCAAGTTATGATTCTTCATCTAATAGAAATTCTCCGAATGTGACTTCACCTATGAACAAAAATACAAAATCTCCTCCGAGGAGTAATCCCAGTACGGCTCCAGAAACCCCAGGAACGCCATTGATGGGGAAGGAAGGAGAAAATGAAGAAGAAGAAGAAGATGAAGATGAAGATGAAGATGAAGATGAACAAGTGTACAAAACTGCTGATCTTGAAGTGAGCAAGAGATCAGGTAAGAAAAAGTTGAAACTAATGGCTTTAATTGAAATAAGTGTTTTTCTTTGCGTTATAGCTGCTTTGATATCGAGCTTGACCATCCATAAACTGCAAAACATGGTGATTTGGAGTCTGAATTTATGGAAATGGTGCGTTTTGGTGTTTGTGATTATCTGTGGTAGAATAATCACAGAGTGGTTCATCAACATTTTGGTTTTCTTGTTTGAGAGGAACCTCGTATTCAAAAGGAAGGTTCTTTATTTTGTTTATGGAGTAAAGAAGAGTGTTCAGGCCTTCATTTGGCTAGCTTTGGTTCTTCTAACATGGTTTCTTCTGTTCAATCATGGAGTTAAAAGATCCAGAAGAGCCAGAAAGATTCTGAATTACATAACAAGAGCACTTGCTTCTTGCCTTATAGGATCAGGTATATGGCTAGTGAAAACTTTATTCATAAAGCTACTAGCTTCTTCTTTCCAATGCTCCAGATTCTTTGACAGGATTCAAGAATCAATTATTCATCAGTACATTGTTCAGATTCTCTCGGGGCCGCCAATGATGGAGATGGCTGAAATGGTAGGGAAAAGTGGGAGTACTGGTCAGCTCAGTCTTAGGATACGGAACAAAGAGAAGAAAGGAGAGAAAGAAGAGGTCATTGATGTGGACAAGTTGAAGAAGATGAAGCAAGACAAGGTTTCTGCTTGGACAATGAGGGGCTTAGTTAATGTGATAAGGAGCTCTGGGTTGTCCACCATACCCGATACACTCGAAAGCTATAACGACAATGACGAGGAAGGAGAGCAGAAAGACATGGAAATTAAGAGTGAGTGGGAAGCAAAAGCAGCAGCTTATAGAATTTTCAAGAATGTAGCCATGCCAGGAAATAAGTACATTGAAGAGGAAGATCTCTTGAGATTCATGAAGAAAGAGGAGGCGGACAATGTGCTTCCTTTAATTGAAGGAGCTGCAGAAACTGGAAAGATAAAGAGGAAGTCCCTCAAGAATTGGCTGGTGAAAGTTTACTTGGAACGCAAGTCACTGGTGTATTCCTTGAATGATACAAAAACTGCTGTTGATGACCTGAACAATCTAGTCTCAGTGGTTGTGCTCATAATAATCGTCATAGTCTGGCTTCTTTTAATGGATTTCTTAACAACTCAGGTGCTTCTCTTCATTTCATCTCAGCTTTTACTCGCCGTGTTCATTTTCGGAAACACAGCCAAGACTTTGTTTGAAGCCATCATATTCGTCTTCGTAATGCACCCTTTCGACGTTGGAGATCGCTGTGTCATTGATGGTGTACAGATGACAGTGGAAGAGATGAATATATTGACGACTGTGTTTTTAAGATATGACAATGAGAAGATATTCTATCCAAATTCAGTTCTGGCCACCAAACCAATCAGCAATTACTACAGAAGCCCATATATGAGTGATTCAGTTGAATTTGCTGTTGATATTTCTACCTCCATGGAGACAATTGGTGCTTTGAAAGCTTCAATAAAAGCATATCTGGAGGGCAAGCCTCAGCATTGGCGTGCAGGGCATAGTGTGGTTGTGAAGAACATAGAGAATGTGAACAAGATGAATATGGCACTCTATGTGACTCACACCATTAATTTCCAAAACTATGGAGAAAAGAGCAGCAGAAGATCAGAGCTAGTTTTGGAATTGAAGAGAATTTTCCAAAATCTTAATATTACATACCATCTTCTTCCTCAAGATGTTCATCTCAGTTATGTGGGACCAGAAGCACCATCTACTGATTGGAGATGA	2262	0.4014	MEKKTSENEVVLQIQEKEEASSYTTTKESQMDSSPDIRNVSPSPGKPPKIPTETLIKRRSLSRSEFSKPKSRLLEPPYQAHPKFLEAKTQMASYDSSSNRNSPNVTSPMNKNTKSPPRSNPSTAPETPGTPLMGKEGENEEEEEDEDEDEDEDEQVYKTADLEVSKRSGKKKLKLMALIEISVFLCVIAALISSLTIHKLQNMVIWSLNLWKWCVLVFVIICGRIITEWFINILVFLFERNLVFKRKVLYFVYGVKKSVQAFIWLALVLLTWFLLFNHGVKRSRRARKILNYITRALASCLIGSGIWLVKTLFIKLLASSFQCSRFFDRIQESIIHQYIVQILSGPPMMEMAEMVGKSGSTGQLSLRIRNKEKKGEKEEVIDVDKLKKMKQDKVSAWTMRGLVNVIRSSGLSTIPDTLESYNDNDEEGEQKDMEIKSEWEAKAAAYRIFKNVAMPGNKYIEEEDLLRFMKKEEADNVLPLIEGAAETGKIKRKSLKNWLVKVYLERKSLVYSLNDTKTAVDDLNNLVSVVVLIIIVIVWLLLMDFLTTQVLLFISSQLLLAVFIFGNTAKTLFEAIIFVFVMHPFDVGDRCVIDGVQMTVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNYYRSPYMSDSVEFAVDISTSMETIGALKASIKAYLEGKPQHWRAGHSVVVKNIENVNKMNMALYVTHTINFQNYGEKSSRRSELVLELKRIFQNLNITYHLLPQDVHLSYVGPEAPSTDWR	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g3242	753	MobiDBLite	consensus disorder prediction	52	70	-	-
	Alju02g3242	753	MobiDBLite	consensus disorder prediction	15	40	-	-
	Alju02g3242	753	Pfam	Mechanosensitive ion channel	525	729	IPR006685	GO:0016020\|GO:0055085
	Alju02g3242	753	Gene3D	-	584	633	IPR023408	-
	Alju02g3242	753	PIRSF	Memb_At2g17000	2	752	IPR016688	-
	Alju02g3242	753	MobiDBLite	consensus disorder prediction	1	160	-	-
	Alju02g3242	753	Coils	Coil	132	152	-	-
	Alju02g3242	753	MobiDBLite	consensus disorder prediction	137	157	-	-
	Alju02g3242	753	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	13	745	IPR016688	-
	Alju02g3242	753	MobiDBLite	consensus disorder prediction	90	120	-	-
	Alju02g3242	753	FunFam	Predicted mechanosensitive ion channel	584	633	-	-
	Alju02g3242	753	SUPERFAMILY	Sm-like ribonucleoproteins	574	633	IPR010920	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g3242	Alju-ChrAlju02	49926249	49929805	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g3242	34	741	Mechanosensitive Ion Channel Family	AT5G12080	52.314	0.0	737