Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3240 ATGCCGGTGAATCTCACGCCCAACGCGATCGCGGCGATTGTCGCCGGCGACGTGAACTCGAAGCCGCTTCTCCAGGTCCTGGACATCAAGTTGCTTTCTAATAATGCGCAGCAGGAGAGGTACCGGGTTCTGCTTTCCGATTCCGCTTCCTCTCAGCACGCTATGCTCGCGACTCAGCTGAATGACCGAGTTAGAACCGGACGAGTTAAGAAAGGTTCCGTCGTGCAGTTGATTGAGTACATTTGCAGTCAAATTCAGAACCGCAAGATCATTGTTGTGCTCAACATGGAAACTATAATTCCAGATTGTGAGATTATCGGTAATCCAAACTCATCCGTAGGATCTGATTCAACAGCTCAGAAAGCATTCTCTAATAACAATATGCAGAACACATCCAGGTTTAATAACAATCATCTATCTGCTCAAAATTCAAGTCGTGATGAGCAGAATTTCAGACCAACTGTTCAACCTCCATTCCGACCACCACCAGTTTACAAAACCCACGGTGCAATTATGAAGAATGAAGCACCTGCACGAATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCTATTAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGAGGAGATGGAAAAGTTTTCTCTTTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACTTGCTTCAATGTTGTTGTTGACCGATTTTATGATGTAATTGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCGCAGAAGAACTTCAATCATTTGAAGAATGACTGGGAAATTTTCCTGGACTCTAATTCATCTGTGGAGCTTTGCCCTGATGAAGATGCTTCAATACCCAGACAGCAATTCTCCTTTAGGCCTATCAGTGACATTGAGAATGCCGAAAGTAACTGCATACTTGATGTTATTGGGGTTGTGACATTTGTAAATCCCTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCTCAGACGAATACTGAATGTAAAGGACATGTCTGGTAGGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTTCAAGAGATGGTTGATGGTGGGTTTTACCCAGTTCTGGCAGTCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACCATTTCTTCTACCCAACTCTTCATTAACCCAGATTTTCCTGAGGCTCATAGATTAAGAGAGTGGTTTGATCGAGGGGGGAAAGATTCAGCTTCTCTGTCCATTTCTAAGGACATCACGCTTGGAGGAGGACCTAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTGGGGCGATCAGATAAGCCAGACTGGATAACGGTGAGGGCAACTTTATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGCCCCCTGATGATTGGAGATCGACAGTGCAGTAAAAAGGTGACGAAGTCTGGAACAGGAAGCACTAGGTGGCAATGCGATAGATGCAATCAAGAGTTTGAGGAGTGTGATTACCGTTACCTTCTTCAAGCCCAAATTCTGGATCATACGGGAGTAACTTGGGTCACAGCATTCCAAGAATCAGGCGAGGAAATATTGGGTTGCTCAGCAAAGGAGCTATACTTATTGAAGTATGAAGAGCAGGATGATGATAAATTTGGCAACATAATCCGCAGTAAACTCTTCAATCAGTTTGTGTTTCGGCTGAAAGTTAAGGAGGAATTGTATGGTGATGAACAGAGGGTGAAGATCACAGTGGTCAAGGCAGATAAAGTGGATTATTCTTCAGAGAGTAGATACGTGCTAGATTTGATTTCAAAAATTTGTAAGCAGTAA 1890 0.4333 MPVNLTPNAIAAIVAGDVNSKPLLQVLDIKLLSNNAQQERYRVLLSDSASSQHAMLATQLNDRVRTGRVKKGSVVQLIEYICSQIQNRKIIVVLNMETIIPDCEIIGNPNSSVGSDSTAQKAFSNNNMQNTSRFNNNHLSAQNSSRDEQNFRPTVQPPFRPPPVYKTHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNVVVDRFYDVIEVGRVYLISKGSLKPAQKNFNHLKNDWEIFLDSNSSVELCPDEDASIPRQQFSFRPISDIENAESNCILDVIGVVTFVNPSVPILRKNGMETLRRILNVKDMSGRSVELTLWGDFCNREGQKLQEMVDGGFYPVLAVKSGRVNDFSGKSIGTISSTQLFINPDFPEAHRLREWFDRGGKDSASLSISKDITLGGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATLSFIKTDTFCYTACPLMIGDRQCSKKVTKSGTGSTRWQCDRCNQEFEECDYRYLLQAQILDHTGVTWVTAFQESGEEILGCSAKELYLLKYEEQDDDKFGNIIRSKLFNQFVFRLKVKEELYGDEQRVKITVVKADKVDYSSESRYVLDLISKICKQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3240 629 Gene3D - 291 431 IPR012340 -
Alju02g3240 629 SUPERFAMILY Nucleic acid-binding proteins 179 293 IPR012340 -
Alju02g3240 629 SUPERFAMILY Nucleic acid-binding proteins 447 626 IPR012340 -
Alju02g3240 629 FunFam Replication protein A subunit 179 288 - -
Alju02g3240 629 MobiDBLite consensus disorder prediction 133 152 - -
Alju02g3240 629 NCBIfam replication factor-a protein 1 (rpa1) 4 625 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Alju02g3240 629 CDD RPA1_DBD_B 314 421 - -
Alju02g3240 629 MobiDBLite consensus disorder prediction 133 159 - -
Alju02g3240 629 Pfam Replication factor-A C terminal domain 466 618 IPR013955 -
Alju02g3240 629 FunFam Replication protein A subunit 292 431 - -
Alju02g3240 629 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju02g3240 629 SUPERFAMILY Nucleic acid-binding proteins 297 425 IPR012340 -
Alju02g3240 629 FunFam Replication protein A subunit 432 626 - -
Alju02g3240 629 Pfam Replication protein A OB domain 303 407 IPR031657 -
Alju02g3240 629 FunFam Replication protein A subunit 4 112 - -
Alju02g3240 629 CDD RPA1_DBD_A 182 285 - -
Alju02g3240 629 CDD RPA1_DBD_C 450 625 IPR047192 -
Alju02g3240 629 Gene3D - 432 626 IPR012340 -
Alju02g3240 629 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Alju02g3240 629 Pfam OB-fold nucleic acid binding domain 194 266 IPR004365 GO:0003676
Alju02g3240 629 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Alju02g3240 629 Gene3D - 3 112 IPR012340 -
Alju02g3240 629 Gene3D - 179 289 IPR012340 -
Alju02g3240 629 PANTHER REPLICATION FACTOR A 1, RFA1 193 602 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3240 Alju-ChrAlju02 49920872 49923816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3240 24 625 Core DNA Replication Machinery Family AT2G06510 69.305 0.0 909