Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3239 ATGAGATTTCTCCTCGTCGATATAAGCCTATCGTTTTCGCTCGGAGCCTCCGCTGGAATTAGGGTTTGCCCTTCGCAAAGCGACTCAACACTTACACCGCCACCGGCGGCGTTGAAATCCTTTGTGCTGCATCCATCCTTCACTGCAACGATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTCGCCGATGGAGTTTTCTTCGCCGAACTGAACGAGGTCTTGATCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAGGTTAGAGTTACTCCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACCCAGAATGTGCTTGGTGAGAAGGGGAGGAGAATCCGGGAACTGACCTCAGTGGTACAGAAGAGATTTAAGTTTCCGGAGAATAGCGTGGAGCTATATGCTGAGAAGGTGAACAACAGGGGTCTTTGTGCTATTGCTCAGGCCGAGTCTCTCCGCTATAAGCTTCTTGGTGGTCTCGCTGTGCGTAGGGCATGCTATGGTGTTTTAAGATTTGTCATGGAAAGTGGAGCAAAGGGGTGTGAGGTAATTGTAAGTGGAAAACTGAGGGCCCAGCGTGCCAAATCCATGAAGTTCAAGGATGGATACATGATTTCATCTGGTCAGCCAGTCAAGGACTACATTGATTCTGCAGTAAGACATGTGCTCCTCAGACAGGGGGTTCTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCTAAGGGTAAGCAGGGTCCTAAAACTCCTCTTCCTGATATTGTCACAATCCATCCTCCAAAGGAGGAAGAAGAATACATCCGGCCTGCTGCTATTGGGGCAGTCGTCACTGGGCCAGTCGCTGATGTGGATATCCCCGCTGTGCTGGCGGCTTGA 885 0.5028 MRFLLVDISLSFSLGASAGIRVCPSQSDSTLTPPPAALKSFVLHPSFTATMATQMSKKRKFVADGVFFAELNEVLIRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIRPAAIGAVVTGPVADVDIPAVLAA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3239 294 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 56 248 - -
Alju02g3239 294 Gene3D - 47 141 IPR015946 -
Alju02g3239 294 ProSiteProfiles Type-2 KH domain profile. 71 142 IPR004044 GO:0003723
Alju02g3239 294 FunFam 40S ribosomal protein S3 143 277 - -
Alju02g3239 294 SUPERFAMILY Ribosomal protein S3 C-terminal domain 143 241 IPR036419 -
Alju02g3239 294 Pfam KH domain 71 143 IPR004044 GO:0003723
Alju02g3239 294 NCBIfam 30S ribosomal protein S3 58 260 IPR005703 GO:0003735|GO:0006412|GO:0015935
Alju02g3239 294 CDD KH-II_40S_S3 55 145 - -
Alju02g3239 294 ProSitePatterns Ribosomal protein S3 signature. 197 233 IPR018280 -
Alju02g3239 294 Gene3D - 143 269 IPR036419 -
Alju02g3239 294 FunFam 40S ribosomal protein S3 51 142 - -
Alju02g3239 294 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 60 149 IPR009019 GO:0003723
Alju02g3239 294 Pfam Ribosomal protein S3, C-terminal domain 156 238 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3239 Alju-ChrAlju02 49914647 49918700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3239 51 291 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.490 1.64e-152 424