Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3212 ATGTTATGTGCCAGCCATCGGCGTGGTCAGAGAGAAGCTCCCACAACAGACGCAATGGTGAAGTACTCCAGGGAGCCGGACAATCCTACTAAGTCCTGCAAGGCTAGAGGCTCCGACCTCAGAGTCCACTTCAAGAATACTCGAGAAACCGCTTTTGCCATCAGGAAGTTGCCTTTGGCAAAGGCAAAGAGGTACTTGGAGGATGTTCTAGCCCACAAACAAGCCATTCCATTCCGAAGGTTCTGTGGTGGAGTTGGTAGGACGGCCCAGGCTAAGAATAGACATTCTAATGGGCAAGGACGCTGGCCTGTTAAATCAGCTAAATTCATCCTAGACTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCCCTCTACATTTCTCATGTCCAGGTTAATCAAGCACAAAAGCAAAGACGCCGCACCTACCGAGCTCACGGAAGGATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTTATTTTATCTGAGAAGGAAGAACCTGTGAGGAAGGAGCCCGAGACCCAGTTGGCCACAAGTAAGAAATCTTAA 573 0.4834 MLCASHRRGQREAPTTDAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETQLATSKKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3212 190 ProSitePatterns Ribosomal protein L22 signature. 145 169 IPR018260 GO:0003735|GO:0005840|GO:0006412
Alju02g3212 190 Hamap 50S ribosomal protein L22 [rplV]. 18 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju02g3212 190 Pfam Ribosomal protein L22p/L17e 35 170 IPR001063 GO:0003735|GO:0005840|GO:0006412
Alju02g3212 190 Gene3D Ribosomal protein L22/L17 19 190 IPR036394 GO:0003735|GO:0005840|GO:0006412
Alju02g3212 190 SUPERFAMILY Ribosomal protein L22 19 172 IPR036394 GO:0003735|GO:0005840|GO:0006412
Alju02g3212 190 PANTHER 60S RIBOSOMAL PROTEIN L17 19 189 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju02g3212 190 NCBIfam 50S ribosomal protein L22 22 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju02g3212 190 CDD Ribosomal_L22 33 169 IPR001063 GO:0003735|GO:0005840|GO:0006412
Alju02g3212 190 FunFam 60S ribosomal protein L17 19 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3212 Alju-ChrAlju02 49532485 49536131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3212 19 189 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 2.79e-115 323