Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3179 ATGAATAAGAATGCGTTATCTTCTCGACGCGATGCTTTTCCGGCTGGTCTCCGAGTTCTCGTCGTCGACGATGATTTGACATGGCTCAGGATTCTTGAGAAGATGCTGAAGAAGTGCTCTTACGAAGTAACCACATGTTGTCTAGCAAGAGAGGCTCTAAATTTGCTTCGTGAAAGGAAAGATGGATATGACATTGTGATCAGCGATGTAAATATGCCGGACATGGATGGTTTTAAGCTTCTCGAGCATGTTGGTCTCGAGATGGATCTTCCTGTGATCATGATGTCTGTGGATGGAGAAACTAGGAGGGTGATGAAGGGTGTTCAGCATGGAGCATGTGATTACCTCCTCAAGCCTATAAGGATGAAAGAGCTACGAAATATATGGCAACACGTGTTCAGGAAAAGGATGCGCGAGGCAAGAGAATTTGGGAGCCTTAAGGGTTTTGAGGGCTCTCAGTTAATGAGAAATGGAGCAGATCAGTATGATGAAGGGAACTTGTTTGCTATAGAAGATATGACCTCAACAAAGAAAAGGAAAAACCCAGATAGCAAACGTGATAACAAGGAATTTGGAGACCAATCTTCTACAAAGAAAGCTAGAATAGTTTGGTCAGTGGATCTTCACCAGAAGTTTGTCAAGGCTGTGAATCAGCTTGGATTTGATAAAGTTGGTCCCAAGAAAATACTTGATTTGATGAATGTTCCATTGTTGACTCGAGATAATGTTGCGAGCCACTTACAGAAATACCGGCTCTATTTGAGCAGGTTGCAGAAGGCTGGAGATCAAAATTCTTCCTCAAGTGGGATTCAACAATCCGATTTAGTATCAAAAGATCCTGCAGCAAGTTTCTCTTTTCAGAACCCAATAAACGGGCAACAACAAAATGATGTTTCAATTGACAGCAATAAATATTCATCAAATGGAACGTTACAACTTCAGAATGTGGGTGCTGAAATAAGTCATGAAAGTAATAATCTCAAGGGGATCACCTCACAGGCTGCAATAGATAAAAGAACAGAGTTGCCTGCTAGCATTCAAGATACAAATACAAGGAAGAGTGCGGAGAAGATCAATGATCAGTCTTTTGCAACTCCAGATTCAGAAGTAAGACATGCAGCAGTATTCAAGTGCACCAACCCTCGGAGGGAATTCTCAGAAATGCAACTCAAAAAACACCAGCCATATCTTCCAATGAAGGATCGCTTCAGCCACTTGCCATTACCTGGTACAGAGCATCTCATCCAGGTTGTTGATCAACCACAAGCAGATGCTTCAATTCGATCCGAACCATCAGTAATGGAAAGAGAAACTGCTTCCTGCATTGAAACCAACCCTTTGTATGCTGCTGATTACACCAGCGATTATGCCGGTTCTGTTGCTTCCGTAGGAAGTGCTGGAGGTTTTTCCATGCAGTCCAAGAGCTTTATGGGGAACGATGAATCTTTAGAACCCGTTTCTACTTCGAATTTCGGCAGGAAAACAGAGGGACTTGATCTTAATCCTGTTTCTGACCTGGAATTTCACCAAGGAGACCTACTTATAGGAGGTGAGTTCCCTTCTTCTGCTGCACCTTTGGAGGACTCGAAATCCTTTTGGCTACAAGGTGATCGCTGTATGAACTCTGGACTGCCCAATATAGAGATGCCAGAGTATTATTATGATCCAGGACTTGCTGGGGAAGTTCCAATTCACTTGTTTGATACAGCTGAATATCCAGCAGTAGATCAAGGGCTTTTCATAGTATGA 1749 0.4271 MNKNALSSRRDAFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMREAREFGSLKGFEGSQLMRNGADQYDEGNLFAIEDMTSTKKRKNPDSKRDNKEFGDQSSTKKARIVWSVDLHQKFVKAVNQLGFDKVGPKKILDLMNVPLLTRDNVASHLQKYRLYLSRLQKAGDQNSSSSGIQQSDLVSKDPAASFSFQNPINGQQQNDVSIDSNKYSSNGTLQLQNVGAEISHESNNLKGITSQAAIDKRTELPASIQDTNTRKSAEKINDQSFATPDSEVRHAAVFKCTNPRREFSEMQLKKHQPYLPMKDRFSHLPLPGTEHLIQVVDQPQADASIRSEPSVMERETASCIETNPLYAADYTSDYAGSVASVGSAGGFSMQSKSFMGNDESLEPVSTSNFGRKTEGLDLNPVSDLEFHQGDLLIGGEFPSSAAPLEDSKSFWLQGDRCMNSGLPNIEMPEYYYDPGLAGEVPIHLFDTAEYPAVDQGLFIV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3179 582 Pfam Myb-like DNA-binding domain 204 251 IPR001005 -
Alju02g3179 582 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Alju02g3179 582 SUPERFAMILY CheY-like 16 140 IPR011006 -
Alju02g3179 582 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Alju02g3179 582 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 307 IPR045279 GO:0009736
Alju02g3179 582 SMART REC_2 17 129 IPR001789 GO:0000160
Alju02g3179 582 CDD REC_typeB_ARR-like 19 133 - -
Alju02g3179 582 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Alju02g3179 582 MobiDBLite consensus disorder prediction 282 304 - -
Alju02g3179 582 MobiDBLite consensus disorder prediction 174 194 - -
Alju02g3179 582 FunFam Two-component response regulator 195 258 - -
Alju02g3179 582 Gene3D - 17 186 - -
Alju02g3179 582 Gene3D - 195 258 - -
Alju02g3179 582 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3179 Alju-ChrAlju02 49168537 49173464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3179 11 305 Response Regulator Gene Family AT2G25180 49.169 1.89e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju02g3179 Response_reg 1.8e-23 CL0304