Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3145 ATGGAGCGGTACGGTCGGACTAGTGAAGGCTCGCAGTCTGATCCGTCACCGGAATGGACGGGAACGGGAGGCGAAACAGGGCTCGAAGAGCCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAAACTAATTGTATGTACTATTTGAGGACTGGTTATTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTAAGAGGACTGGAGGGGAGTACCCAGAACGAGCAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTCCGTCCTGCAAGTATCACCATCCTAGGCAGGGAGGAGGCACTGTTAGTCCAGTGTCACTGAATTATTATGGATTTCCATTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAATTCCACCATCCGCAGCCTGATGGAATGCCAATTCCAGCACAACCACCAGTTCCCCCGGTTTCACCTCTACCTGTACCAATGCCTTCACCATTATATCCAACTGTACAGCCTCCATCTGGCCCTTCATCGTCACAATATGGTGTAATGGTTGCATCTCCAAGGCCACCTCTGCTACCTGGCTCATTAGTCCATAGTCCCTATGGGCATGTGGTTTTGTCCCCAGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCTGCAAGCCCCTTAGTTCCCTCTAGTACTCCATCTAATGTTGGGTCGGCACAGCTTTATGGGATAGGGCAGCTACCTTCCCCAGCATCAACTTATTATGGACATTATCAACCTTCAGGCTCCTCAGTTGGTCCTTCAGGCAGTAGTCAGAAGGAACACTCATTTCCAGAAAGACCTGGTCAGCCAGAATGTCAGTATTATATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAAATATCATCATCCTGAATTAGTTGCTCCAAAAACAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGTGCACCTCCTTGCACTCATTATGCACAGCGTGGAGTGTGTAAATTTGGCCCGGCATGCAAATTTGATCATCCTATTGGAGCACTGAGCTATAGTCCGTCTGCTTCCTCCCTAGCTGATATGCCGGTTGCTCCCTATCCTGTGGGCTCATCAATTGGCACTCTTGCTCCATCATCTTCATCGTCAGAATTGCGACCTGAACTCGCCTCAGGATCTGGCAAGGAGTCTTCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAGTTGGCTTAACCTTGTCATCTGGTGGATCCATTTCTCATGCAACTGCTCAACAATCTGCTCAAAGTTCCAGTCCTTCAACAATCACCAATAACACCACAAGCAGCTCCGTCTCTCACACCTCTAGTTAA 1452 0.4952 MERYGRTSEGSQSDPSPEWTGTGGETGLEEPVWQLELGGGESYPQRPDETNCMYYLRTGYCGYGSRCRFNHPRDRGAVIGAKRTGGEYPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVSPVSLNYYGFPLRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMPIPAQPPVPPVSPLPVPMPSPLYPTVQPPSGPSSSQYGVMVASPRPPLLPGSLVHSPYGHVVLSPAVVPFPGWSPYQPPASPLVPSSTPSNVGSAQLYGIGQLPSPASTYYGHYQPSGSSVGPSGSSQKEHSFPERPGQPECQYYMKTGECKFGPSCKYHHPELVAPKTNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSGKESSSSRISSSMSTSTASVGLTLSSGGSISHATAQQSAQSSSPSTITNNTTSSSVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3145 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Alju02g3145 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 375 IPR000571 GO:0046872
Alju02g3145 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Alju02g3145 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Alju02g3145 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Alju02g3145 483 Gene3D - 293 378 - -
Alju02g3145 483 SUPERFAMILY CCCH zinc finger 308 331 IPR036855 GO:0046872
Alju02g3145 483 Gene3D - 122 168 - -
Alju02g3145 483 MobiDBLite consensus disorder prediction 279 301 - -
Alju02g3145 483 SUPERFAMILY CCCH zinc finger 353 379 IPR036855 GO:0046872
Alju02g3145 483 PANTHER PROTEIN PHOSPHATASE RELATED 36 412 - -
Alju02g3145 483 SUPERFAMILY CCCH zinc finger 47 74 IPR036855 GO:0046872
Alju02g3145 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Alju02g3145 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Alju02g3145 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Alju02g3145 483 MobiDBLite consensus disorder prediction 279 307 - -
Alju02g3145 483 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Alju02g3145 483 MobiDBLite consensus disorder prediction 405 483 - -
Alju02g3145 483 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Alju02g3145 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Alju02g3145 483 Gene3D - 43 121 - -
Alju02g3145 483 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Alju02g3145 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Alju02g3145 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Alju02g3145 483 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Alju02g3145 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Alju02g3145 483 MobiDBLite consensus disorder prediction 1 30 - -
Alju02g3145 483 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3145 Alju-ChrAlju02 48543028 48547975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3145 1 442 C2H2 Transcription Factor Family AT5G18550 56.277 3.85e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju02g3145 zf-CCCH 3.7e-08 CL0537