Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3131 ATGGATCGTCTCAGAATTGGCTCTGTTAGGCCATTGCCATTGGTCTCTCAACTTCCGCCTCCTTCTGATGAACCTGTTGTTGCGATGGCCGAGGAGGCGGCAGGGAAAATCTCCGGCAAGCGTATTAGAGATGTAGAGAGGAGAGAGAGCCTTATGATTGAGCGTGATCGGAGATTGAAGATGAATCATATGTTCGCTGAGCTTCAATCCACCGTTCCTGGTCTCTTTTACAAGGCTACAAGGGAAGTGATTGTGAATCAAACAATAAACTACATCAAGGACCTTGAGAAGAAGAAGAAGAGATTGGAAGAGCTTAAGGGGTTAATAATGGAACTAGAATCAGCTGGAGGGAAGTTGATGCTTCCATGTACAAGCAATAAGAATTCCTCCATTACAGTCTCCGTATCTGGAAACGTCGCTTTCTTTGGGATTGAATCAAAAGCTCAATTTGGTTTGATCACAGCGATCTTCAAGGTCTTCTACAAGCACAATGCTGAAATTTTGGCTGCAAATATTTCTGTCAACAATGGAGAATTGACATTGGCAATCACAGCTTCATTAGTTCATGATGGTGATAATGGTGGGAATGCTACAGCTGAGAAAATCAGGGGAGAGATTCTGGGTTTGTAG 630 0.4349 MDRLRIGSVRPLPLVSQLPPPSDEPVVAMAEEAAGKISGKRIRDVERRESLMIERDRRLKMNHMFAELQSTVPGLFYKATREVIVNQTINYIKDLEKKKKRLEELKGLIMELESAGGKLMLPCTSNKNSSITVSVSGNVAFFGIESKAQFGLITAIFKVFYKHNAEILAANISVNNGELTLAITASLVHDGDNGGNATAEKIRGEILGL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3131 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 108 IPR036638 GO:0046983
Alju02g3131 209 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 39 201 IPR044278 GO:0003700|GO:0006355|GO:0009960
Alju02g3131 209 Coils Coil 85 115 - -
Alju02g3131 209 Pfam Helix-loop-helix DNA-binding domain 51 96 IPR011598 GO:0046983
Alju02g3131 209 Gene3D - 39 120 IPR036638 GO:0046983
Alju02g3131 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Alju02g3131 209 SMART finulus 51 101 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3131 13 116 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.727 5.44e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g3131 HLH 1.9e-07 No_clan