Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2960 ATGGAGCAGAACGACGTGATTCCACCGTTCATTATAAAGACTTTCCATATGGTGAGCGATCCCAACACCGATTCTCTCATAACTTGGGGTCGAGCCAACAATAGCTTCATCGTCGTCGATCCTCTGGATTTCTCTCGGATCATCCTACCTGCATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGTTAAACACCTACGGGTTTAGAAAGGTGGATCCAGATCGATGGGAATTCGCGAACGAGTGGTTCCTTAGGGGGCAGAAGCAGTTGTTGAAGAATATTGTGAGGAGGAAACAGAGTAGGAGTGGCTCGTTGTTGTTTCAGGGGAAAAATAATGAGGAGGTGGAAGATGAAGCGTTGATGATGGAGATAGCGAGGTTGAAGGAAGAGCAGAAATCGTTGGAGGAAGAGCTTCAAGGGATGAATAAGAGATTGGAGACAACTGAGAAACGACCTCAGCAAATGATGGCGTTTCTGTGCAAAGTCGTGGAGGACCCAGACGTGCTCTCTCGAATTTTGTTGGAGAAAGGGCAGAAGCAATTGGGAGAGAAGAAGCGGCGGCTGATATCGTCGCCGTCGCCGTCGCCTTCGTCTGGTATGGCGGCGGTGAAGACCGAGTTTGACGAAGAGGAAGCTGCTCTAGGCGGTGCGATAATATCTTCGCCGTCGCCGGAAACTACTAATGGTTTTGAGCTCGGTCGTTATAATCAGGCATCTCCGACGGAAGAAACAATAATCTCCGGCGCCGATAGGAGTCCAGGTTGGTGGATCGAGAGAAATGATAGTATAATGGTGAGGCCTCGGATAAATCAACAAGGTTATAATTATTGCAGCGCGCCGAGCCCGTTGACGGCGGCTGTGGCGGCGAGAAGGGATGAGAAAGCGGCGATGTCGATGTCGGCGCGTGAGGGAGAAAGCAATTCGGCGAGCGAGGGACCAAGGAGCTATTTTACAGAAATGGCGGCGGAGAGCAGTCCACGGCCACCTTATCCATTTTCGCTGTTGGAAGGTGGCTTCTAG 1026 0.5058 MEQNDVIPPFIIKTFHMVSDPNTDSLITWGRANNSFIVVDPLDFSRIILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKQSRSGSLLFQGKNNEEVEDEALMMEIARLKEEQKSLEEELQGMNKRLETTEKRPQQMMAFLCKVVEDPDVLSRILLEKGQKQLGEKKRRLISSPSPSPSSGMAAVKTEFDEEEAALGGAIISSPSPETTNGFELGRYNQASPTEETIISGADRSPGWWIERNDSIMVRPRINQQGYNYCSAPSPLTAAVAARRDEKAAMSMSAREGESNSASEGPRSYFTEMAAESSPRPPYPFSLLEGGF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2960 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 212 IPR027725 -
Alju02g2960 341 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Alju02g2960 341 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 MobiDBLite consensus disorder prediction 296 341 - -
Alju02g2960 341 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju02g2960 341 Coils Coil 112 153 - -
Alju02g2960 341 Gene3D - 2 100 IPR036388 -
Alju02g2960 341 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2960 Alju-ChrAlju02 45244222 45245375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2960 6 192 HSF AT3G24520 67.016 5.68e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju02g2960 HSF_DNA-bind 2.4e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g2960 02 45244222 45245375 Alju02g2960 02 45244222 45245375 ECH