Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2953 ATGGAGAAAGAATTCATGCGACTGTATGAAGCAGTGAAGAAGGCGGCCGATGCAGCAGCAACCTCAACCGACAACCAAGTCGAAGAAAATCGATGCCTTGATGCGTTCAAGCTGCTCAAGAAATTTCCCGTCAATTATGAAATTCTGCGATCAACCCAAGTTGGCAAACATCTAAGAGTTCTAACAAAGCATCCCAGAAAGAAGATCCAGGCTTTTGCTATAGACCTGGTAGATATATGGAAAGCCATAGTAATCAAGGAAATAAGCAAAAATAAGAAACAAAAAGTTCATCAGAAGATTTCAGACGCTGAGAAGACAGATAAGAATGAGACCTCAAACTCCAGAAATGAAAAGATTAAGGTACAAGATTCTGATGTCAAACCTGTTCCTATGGGAAACGTTAAAGTTGATGAAAAGGTTCGGAAGAGTCTTGTGGTAAGGCTTAAGGTTCCGAAGGGCGTCCTCGACGCTGTTGAGAAAACAATTTCTACATCAAACATAGCCAAAAACGATGAGAAGAAACAAGTTTCTGAAATGCTGAACAAGGAACCCTCAAGACCTACTGCTCCTTTAGAGCAGAAAACTATGATTAAAACTGGCAATGTGACACGAGACAAAATAAGGGAAATCCTTCAAGAGGCATTATCTAGGGTTTCAGGGGAGGCAGATGAAGCAATCAAGGATCAAGTTAATGCATGTGACCCTATAAGAGTTTCTGTTGCTGTAGAGTCTGTACTATTTCAGAAGTGGGGTTCTTTTGATAAAGGGGCTAGAAGTATAAAGATCAAGTACAGGTCTTTGATGTTTAACCTCAAGGATCCAAATAACCCAGATTTTCGAAGAAGAGTTCTGCTTGGAGAATTCAAACTAGACCAGATCGTGAAGATGAGAACAGAAGACATGGCTAGTGATGAAAGGAAGAAGGAGATTGAGAAGATCAGAATGAGAGCTTTGTTCAAGTGTGAGAATGGACAGAAACGAAAAGCCACAACTGATCATCCTTTCTTGAAGCCCTCTCACTCTCACGTTACCCACGGCCGGACACTACTACCATTTCCTATTCTCTCCCTCTGCAAGTCATGGATTGTTCTGAAGACGCGAATATAG 1107 0.4128 MEKEFMRLYEAVKKAADAAATSTDNQVEENRCLDAFKLLKKFPVNYEILRSTQVGKHLRVLTKHPRKKIQAFAIDLVDIWKAIVIKEISKNKKQKVHQKISDAEKTDKNETSNSRNEKIKVQDSDVKPVPMGNVKVDEKVRKSLVVRLKVPKGVLDAVEKTISTSNIAKNDEKKQVSEMLNKEPSRPTAPLEQKTMIKTGNVTRDKIREILQEALSRVSGEADEAIKDQVNACDPIRVSVAVESVLFQKWGSFDKGARSIKIKYRSLMFNLKDPNNPDFRRRVLLGEFKLDQIVKMRTEDMASDERKKEIEKIRMRALFKCENGQKRKATTDHPFLKPSHSHVTHGRTLLPFPILSLCKSWIVLKTRI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2953 368 Pfam Transcription factor S-II (TFIIS), central domain 199 320 IPR003618 GO:0006351
Alju02g2953 368 Gene3D - 185 304 IPR036575 GO:0006351
Alju02g2953 368 SMART mid_6 205 312 IPR003618 GO:0006351
Alju02g2953 368 ProSiteProfiles TFIIS N-terminal domain profile. 10 87 IPR017923 -
Alju02g2953 368 ProSiteProfiles TFIIS central domain profile. 203 329 IPR003618 GO:0006351
Alju02g2953 368 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 15 323 - -
Alju02g2953 368 CDD TFIIS_I 24 84 - -
Alju02g2953 368 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 5 95 IPR035441 -
Alju02g2953 368 PIRSF TFIIS 2 334 IPR035100 -
Alju02g2953 368 MobiDBLite consensus disorder prediction 95 122 - -
Alju02g2953 368 SUPERFAMILY Elongation factor TFIIS domain 2 194 305 IPR036575 GO:0006351
Alju02g2953 368 SMART TFS2_5 8 86 IPR003617 GO:0005634
Alju02g2953 368 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 101 IPR035441 -
Alju02g2953 368 Pfam TFIIS helical bundle-like domain 37 84 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2953 Alju-ChrAlju02 45104125 45105932 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju02g2953 TFIIS_M 8.5e-31 No_clan