Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2894 ATGAACCAACAGGGTTTTCATCTTCTGGTTCTGTATCTCATATTCTTCTTCATCAGAATATTTTCCTGTGAAGCACAGATTTCATCAAATAAAACTAGTACTGCTCCTTCGTCTTCACAAGATGTTGTCACAAATTTCCGACCAAGTCTTGCTGTTGTAATGGCGATTCTGAGTTTCATGTTCTTTCTAACTTTCTTTCTCCTCATCTATGTCAAGTGTTGCAGTAACAGGGGAGATTCATCAGTTCATGGAAACTCAGAAAGTCAACCTTGGCTTGTCAGAACAAGGTCAACGAGATTCTCTGGAATCGACAAGGCTGTCATAGAATCACTTCCCTTCTTCAAATTCTCTTCCTTAAAAGGATCAAAAGAAGGCCTTGAATGTGCTGTTTGCTTGTCCAAGTTCGAAGATATTGAGATTCTCAGGCTGCTTCCAAAATGTAAACATGCTTTTCACATTAATTGTATTGATCATTGGCTTGAGAAGCATTCTAGTTGTCCTCTTTGTAGGAACAAGGTTGATCCTGAAGATCACACCATCTTCACATATTCTAACAGCTTGAGGCTCCTCATCCATGGTGGTGCTGGCGCAGAATTTGGAGGAGAAGAATCATCCAACTTAGGGCTTTTTGTTCAGAGAGAGGAAGAAGAAGATCAACGAAATAATGGGTCATCATCAAGATTCAATTTTGGAAGCAGCTTTAGAAGAATCATGAACATGAAGGGTTCTTCTTCAAAAGAAGAAGATGAATTGCCTATTCAAAAACCAGCTCACCATGATGATCACAGAAGAAAGGTCTATCACAAGCTCAAACACAGGATTTCTGTATCAGATTTTCTGTTGAAGAATCGATGGAGCAATGTTAGTTCCTCGGACCTCATGTTCTTGAACTCAGAGATGATTGGTTCTGCTTCAAGTTTAAGATTCAACAATACTAACGGTGATCAGAGTCAGGTTACAATTGGAGAAGCAGGAAATGATGATGAGCAAGTTATTGTGATGAATATGAAGGAGGAGATGGAGAGGAAGGTTTCATTTGAGAACAAAGTGAGTGGAGTACTAAAGAAGAACAATCTCAATTCTGATTCAGATTCTGCAGAAAATAATAATTTGGGTGACACATCAAAGTATATTGTGAATTCAGATGAGAAAAGATCATTATCAGATATAACTGCTGTGTCAAGATTTGGAGGTTTGACCATGGGAAATGGTAGCCTTAATAATAATAATAAAGGTTCTTCTTCTTATTCTTCATCTTTGGTTGATGATCAGAAGAATGTGAAAGAAGAAAGAGTGAGACAGATTTGGCTGCCAATTGCCAAAAGAACAGTTCAATGGTTTGTGAACAGAGAAAAAAGGTTTCAGCAATCTCTGAATAATGTATAG 1386 0.3795 MNQQGFHLLVLYLIFFFIRIFSCEAQISSNKTSTAPSSSQDVVTNFRPSLAVVMAILSFMFFLTFFLLIYVKCCSNRGDSSVHGNSESQPWLVRTRSTRFSGIDKAVIESLPFFKFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHSSCPLCRNKVDPEDHTIFTYSNSLRLLIHGGAGAEFGGEESSNLGLFVQREEEEDQRNNGSSSRFNFGSSFRRIMNMKGSSSKEEDELPIQKPAHHDDHRRKVYHKLKHRISVSDFLLKNRWSNVSSSDLMFLNSEMIGSASSLRFNNTNGDQSQVTIGEAGNDDEQVIVMNMKEEMERKVSFENKVSGVLKKNNLNSDSDSAENNNLGDTSKYIVNSDEKRSLSDITAVSRFGGLTMGNGSLNNNNKGSSSYSSSLVDDQKNVKEERVRQIWLPIAKRTVQWFVNREKRFQQSLNNV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2894 461 SUPERFAMILY RING/U-box 107 176 - -
Alju02g2894 461 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Alju02g2894 461 MobiDBLite consensus disorder prediction 355 374 - -
Alju02g2894 461 SMART ring_2 128 169 IPR001841 -
Alju02g2894 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 452 - -
Alju02g2894 461 CDD RING-H2_EL5-like 127 170 - -
Alju02g2894 461 Pfam Ring finger domain 127 170 IPR001841 -
Alju02g2894 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 178 IPR013083 -
Alju02g2894 461 FunFam RING-H2 finger protein ATL43 103 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2894 Alju-ChrAlju02 43877222 43878607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2894 11 455 C3H Transcription Factor Family AT4G28890 44.298 6.35e-110 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g2894 02 43877222 43878607 Alju02g2894 02 43877222 43878607 ECH