Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2888 ATGGCTGAGCCACTTCTTAGCTCAGAGACTGGCACTTCCACCAACTGCTCTTCTCCTTCTCCTTCTCCTTCTCCATCTTCGTCTTCCTCTTCTTCTTCGTCCTTGTCTTCTTCTTCTGCTCAAAAGAAGCAGCTCAAGCGAGCGAGAGAAGAAGATAGTAATAGCAAGCACTCTGTTTATAGAGGGGTCCGAATGCGAACGTGGGGTAAATGGGTTTCTGAAATCCGCGAACCCAGGAAGAAAAATCGGATCTGGCTTGGCACTTTCGCCACTGCCGAGATGGCCGCCCGTGCCCACGACGTCGCTGCCCTTAGTATTAAAGGCACCTCCGCCATCCTCAACTTCCCTGAGCTCGCCAATTCCCTGCCCCGACCCGCCTCCAAATCGCCCCGAGACGTCCAGACCGCGGCCGCCAAAGCCGCTTCCATGGAGATACTTTCCACCACCACCACCAACAATCTCATCCCCACACCCACAACCTCATCTTCGTCTTCTTCCTCTGCTGAAGATGTTTCCACACCAGAGGAACTAGGCGAGATAGTGGAGCTTCCATCACTGGGTACAAGCTTCCAAGAACCCGACCCGAATAAAGATTTTGTGTTTTTCGACCCGGTAGATGGGTGGTCCTATCCTCACCCATGGTATCACAGTCTTTACGATGATGAGAACAAGTACTGTGGTGGCGACTATTTCACTATGGATCACACATCATCACTACAAGAAGAAGAAACAGAGGGTTTGATTCTTTGTGGCTTTGAAGGCTCGTTGTGGCAACATTAG 780 0.5128 MAEPLLSSETGTSTNCSSPSPSPSPSSSSSSSSSLSSSSAQKKQLKRAREEDSNSKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALSIKGTSAILNFPELANSLPRPASKSPRDVQTAAAKAASMEILSTTTTNNLIPTPTTSSSSSSSAEDVSTPEELGEIVELPSLGTSFQEPDPNKDFVFFDPVDGWSYPHPWYHSLYDDENKYCGGDYFTMDHTSSLQEEETEGLILCGFEGSLWQH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2888 259 MobiDBLite consensus disorder prediction 43 58 - -
Alju02g2888 259 MobiDBLite consensus disorder prediction 1 42 - -
Alju02g2888 259 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Alju02g2888 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 190 - -
Alju02g2888 259 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Alju02g2888 259 MobiDBLite consensus disorder prediction 148 176 - -
Alju02g2888 259 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Alju02g2888 259 MobiDBLite consensus disorder prediction 1 58 - -
Alju02g2888 259 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 CDD AP2 58 118 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Alju02g2888 259 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2888 Alju-ChrAlju02 43411278 43412057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2888 25 221 AP2-EREBP Transcription Factor Family AT5G11590 57.843 4.49e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju02g2888 AP2 2.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g2888 02 43411278 43412057 Alju02g2888 02 43411278 43412057 ECH