Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2880 ATGAGTTTCCCAGAAAAAGATCATAGAGAGAAGAAGATGATGACCAAGAAAGAGAGAGGTTCAATACTTGAAATTTTCAGATATGCTGGGTGGACTGATGTTGTGCTTATGCTGTTGGGAGCTTTGGGAGCCATAGGAGATGGTATGTCCACAAACGTTTTGCTTGTTTTTGCTAGCCGAATCATGAACAGCTTAGGTTATGGGAATGCTCAACAACGACAAAATAATGGTGGGAATTTTTCCATGGCCGAGGTTGACAAGTGCAGTTTATATTTTGTTTACTTGGGATTAGCAGTCATGGCGTTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTATTGAGAATTCGGTACAAGTATTTGGAAGCTGTGCTGAGACAAGAAGTGGGGTTCTTCAATTCCCTAGAAGCAACTACTTCAGACATCATAAACAGCATATCAAAGGATACTTCTCTCTTCCAAGAACTTCTCAGTGAAAAGGTGCCTCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATAGCATTCTCAACGTACTTCTCATGGAGACTAGCAATAGTATCATACCCAACAACACTTCTTCTTCTGATAATACCAGGAATGCTATATGGGAAATACCTAATCTTCTTATCAAACAAGTCCCACAAAGAGTATAGCAAGGCAAACGCCATTGTAGAGCAGGCTTTAAGCTCTATAAAGACTGTGTATTCGTTCACAGCAGAGAGAAGAATCATGGAGAGATATAAAGCAATACTTGAGAGAATCTCAAGGCTTGGAATGAAACAAGGCATAGCTAAGGGCTTGGCTGTGGGAAGCTCTGGCTTGTCTTTTGCTATTTGGGCTTTTATGGCTTGGTATGGAAGTCGTTTGGTTATGCACAAAGGTGAAAGTGGTGGAAGGATTTATGCATCTGCCATTTGCTTCATCATGAGTGGACTATCACTTGGAGTTGCACTTCCTGACCTTAAGTACTTCACAGAAGCATCAGTTGCAGCATCAAGATTATTTCATATGATTGACCGAGTACCGACAATTGATAGTGAAGACACAAGAGGGATTGTGTTAGATTCCATGACTGGAAAGTTACAATATGAGCATGTGAAATTCACATACCCTTCACGTCCAGATTCAATTGTTCTTAAGGATTTTAATCTCACTGTTGAATCTGGCACAACCGTGGCTCTTGTTGGTGCAAGTGGGAGTGGTAAATCCACAGCAATAGGATTAGTGCAAAGGTTTTATGATGCAGATGAAGGTTTTGTGAAGGTTGATGGAGTGGATATAAGAAGCTTACAATTGAAATGGATAAGAGGGACAATGGGACTTGTGAGCCAAGAAGCAGCACTGTTTGGGACTTCAATAAAGGAGAATATTATGTTTGGGAAGCCAGATGCTACCATGGAGGAAGTAATTGCTGCAGCCATGGCTGCCAATGCTCATAACTTCATTAGGCAGCTTCCTGAAGGTTATGAGACTAGAATTGGAGAAAGAGGGGCACTTCTATCAGGTGGACAAAAACAGAGAATAGCTATTGCAAGAGCCATCATTAAGAATCCAGTGATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGATTCTGAATCAGAACTATTAGTTCAGAATGCACTTGATCAGGCCTCCATGGGAAGAACCACTATGGTTGTTTCTCACAAGCTATCAACAGTTAGAAATGCAGACCTCATAGCAGTTGTCAATTGTGGCTGCATTATTGAAACAGGTACACACAACGAACTCCTCAACCGCGAAGATGGGCACTACGCAAAGCTAGCAAAGTTGCAATTCAGTTGGGAAGAACAAGTGCAGAACCCGGATCAGACTATTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGACCAAGTACTGTAAGGTCAAGTCCTTCAGTTTTCCCAAAATCACCGTTGCCTGATACTACTGCCCCACCACGTGATAAGTCTCACCCTCCACCTTCTTTACCACGTCTTCTTTCTCTTAATGCTCCTGAATGGAAACAAGGTCTTGTTGGAAGCCTCTCAGCTATAGGCTTTGGCTCAATTCAACCCATATATGCTTTAACCATAGGGGGTATGATTTCTGCATTTTTTGTTCAAAGCCATGAGGAAATGAAACATAGGATCAGAACATATTCCTTTATTTTCTCTTCCTTAGCCCTTGCTTCTATAATTCTCAATCTCTTCCAACACTACAATTTTGCCTACATGGGAGAGAAACTAACAAAGAGGATCAGGTTACAAATGCTAGAGAAGATCTTAACCTTTGAAACTGCCTGGTTTGATGAGGAACAAAACTCTAGTGGAGCCTTATGTTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAATCACTCGTAGCAGACCGCGTCTCTTTGATCGTTCAAACCACTTCTGCTGTTACAATCGCGATGATCATGGGGCTTATTGTGGCTTGGAAGCTTGCACTTGTTATGATAGCTGTACAACCACTGACAATATTTTGCTTCTATATAAGAAAAGTGCTGCTCTCCACACTTGCAACTAATTTTGTCAAGGCTCAGAATCATAGCACACAAATTGCAGTAGAAGCTGTTTATAACCATAAAATTGTGATTTCCTTTGGAAGCAACAAGAAAGTTGTACAACTATTTGATGAAGCTCAAGAGGCACCTAGGAAGGAAGCCAGGAAGAAGTCTTGGCTAGCCGGGATCGGAATGGGTTCGGCTCAGTGCCTAACTTTCATGACATGGGCTTTGGATTTCTGGTATGGTGGGAAATTAATGCAGAAAGGAGAGATATCAGCAGGGGATGTGTTCAAGACATTTTTTGTATTGGTGAGTACAGGCAAAGTCATAGCTGAAGCTGGGAGCATGACTTCTGATCTTGCCAAGGGTTCTGCAGCAGTAGCATCTGTTTTTGCAATTCTTGATAGACAGTCATTAATCCCAAAGGGTGGGAATGGCATGAATGGGAGTAAGTTGTTGAAAATGAGAGGAAAGATAGAGATGAAGGATGTTGATTTTGCATACCCAAGCAGGCCAGGGACTCCAATACTGAGAAAGTTTTGCTTGGAGGTGAAGTCAGGAACAAGTATAGGAGTGGTGGGGAAAAGTGGGAGTGGAAAATCAACAGTGATAGCTTTAATTCAGAGATTCTATGATGTTCAGAGAGGGTCCATCAAAGTGGATGGTATAGACATAAGAGAACTAGACATTCAATGGTACAGGAAACACACAGCACTGGTTAGCCAAGAACCTGTAATCTACTCAGGAAGCATACGAGACAACGTCTTATTTGGAAAGCAAGATGCAACAGAAAGTGAAGTTGTGGAAGCTGCAAGATCTGCTAATGCTCATGACTTCATTTCGGCACTGAAAGATGGGTATGAAACAGAATGTGGAGAAAGAGGAGTACAACTGTCAGGAGGGCAAAAACAGAGAATTGCAATAGCAAGAGCCATAATTAGAAACCCAACAATACTTCTGCTAGATGAAGCGACCAGTGCCTTAGACGTTGAATCAGAACAAGTTGTACAAGAAGCACTTGATAGGATAATGGTTAGTAGAACTACGGTGGTGGTGGCCCATAGGCTTAACACCATTAAAGAACTTCAATCAATTGCATATGTTTCAGACGGAAAGGTTGTTGAACAAGGTACCTATTCACAGCTTTGGCACAGGAGAGGCGCTTTCTTTAACCTTGCTAGCCATCAAACTTAG 3723 0.4201 MSFPEKDHREKKMMTKKERGSILEIFRYAGWTDVVLMLLGALGAIGDGMSTNVLLVFASRIMNSLGYGNAQQRQNNGGNFSMAEVDKCSLYFVYLGLAVMALAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFNSLEATTSDIINSISKDTSLFQELLSEKVPLFLMHSSSFISGIAFSTYFSWRLAIVSYPTTLLLLIIPGMLYGKYLIFLSNKSHKEYSKANAIVEQALSSIKTVYSFTAERRIMERYKAILERISRLGMKQGIAKGLAVGSSGLSFAIWAFMAWYGSRLVMHKGESGGRIYASAICFIMSGLSLGVALPDLKYFTEASVAASRLFHMIDRVPTIDSEDTRGIVLDSMTGKLQYEHVKFTYPSRPDSIVLKDFNLTVESGTTVALVGASGSGKSTAIGLVQRFYDADEGFVKVDGVDIRSLQLKWIRGTMGLVSQEAALFGTSIKENIMFGKPDATMEEVIAAAMAANAHNFIRQLPEGYETRIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTMVVSHKLSTVRNADLIAVVNCGCIIETGTHNELLNREDGHYAKLAKLQFSWEEQVQNPDQTISSAARSSAGRPSTVRSSPSVFPKSPLPDTTAPPRDKSHPPPSLPRLLSLNAPEWKQGLVGSLSAIGFGSIQPIYALTIGGMISAFFVQSHEEMKHRIRTYSFIFSSLALASIILNLFQHYNFAYMGEKLTKRIRLQMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLIVQTTSAVTIAMIMGLIVAWKLALVMIAVQPLTIFCFYIRKVLLSTLATNFVKAQNHSTQIAVEAVYNHKIVISFGSNKKVVQLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGKLMQKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKGSAAVASVFAILDRQSLIPKGGNGMNGSKLLKMRGKIEMKDVDFAYPSRPGTPILRKFCLEVKSGTSIGVVGKSGSGKSTVIALIQRFYDVQRGSIKVDGIDIRELDIQWYRKHTALVSQEPVIYSGSIRDNVLFGKQDATESEVVEAARSANAHDFISALKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVESEQVVQEALDRIMVSRTTVVVAHRLNTIKELQSIAYVSDGKVVEQGTYSQLWHRRGAFFNLASHQT 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2880 1240 CDD ABC_MTABC3_MDL1_MDL2 370 606 - -
Alju02g2880 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Alju02g2880 1240 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Alju02g2880 1240 Gene3D - 358 611 IPR027417 -
Alju02g2880 1240 FunFam ABC multidrug transporter SitT 992 1240 - -
Alju02g2880 1240 MobiDBLite consensus disorder prediction 645 660 - -
Alju02g2880 1240 FunFam ABC transporter B family member 1 24 366 - -
Alju02g2880 1240 Gene3D - 992 1240 IPR027417 -
Alju02g2880 1240 PANTHER ABC TRANSPORTER B FAMILY 5 690 IPR039421 -
Alju02g2880 1240 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524|GO:0016887
Alju02g2880 1240 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 341 - -
Alju02g2880 1240 FunFam ABC transporter B family member 4 358 613 - -
Alju02g2880 1240 Pfam ABC transporter 386 535 IPR003439 GO:0005524
Alju02g2880 1240 FunFam Putative ABC transporter B family member 8 647 987 - -
Alju02g2880 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 607 IPR027417 -
Alju02g2880 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1239 IPR027417 -
Alju02g2880 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Alju02g2880 1240 Gene3D ABC transporter type 1, transmembrane domain 24 916 IPR036640 GO:0005524|GO:0016020
Alju02g2880 1240 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524|GO:0016887
Alju02g2880 1240 Pfam ABC transporter 1023 1169 IPR003439 GO:0005524
Alju02g2880 1240 CDD ABC_MTABC3_MDL1_MDL2 1002 1239 - -
Alju02g2880 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju02g2880 1240 SUPERFAMILY ABC transporter transmembrane region 25 352 IPR036640 GO:0005524|GO:0016020
Alju02g2880 1240 MobiDBLite consensus disorder prediction 616 663 - -
Alju02g2880 1240 Pfam ABC transporter transmembrane region 41 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju02g2880 1240 Pfam ABC transporter transmembrane region 682 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju02g2880 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju02g2880 1240 SUPERFAMILY ABC transporter transmembrane region 660 978 IPR036640 GO:0005524|GO:0016020
Alju02g2880 1240 SMART AAA_5 1029 1221 IPR003593 GO:0016887
Alju02g2880 1240 SMART AAA_5 395 587 IPR003593 GO:0016887
Alju02g2880 1240 MobiDBLite consensus disorder prediction 616 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2880 Alju-ChrAlju02 43108127 43117656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2880 2 613 Calmodulin-binding Proteins AT2G36910 34.677 2.88e-97 337