Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2808 ATGGGATTTCAAAGAAAAACGGCTTCTCAGCGTCAGGCCCTTCATATTTTTTTTAAAGGGGAGAAGTATCCAACACACAGAGAAATGGAAGACTATGCGGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGAGAAGAAGAAGCAAAATGGAGTGTTAGTATCGCCATGTTCCTCTTCGGGATACAATGCAGTTACCAATAGAAATGTGAAGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACGGCAGATTACATTCTAAAAAAGATTTTCCGGAAGGATGGCCCTTCTCTAGATGAGGAATTTGATTCTTGTCCTCCAGGTCTCAACAATTCCTTTTCTGTTGGTCAAGAGGACCAAGGACCAAATAAAAGGAGAAAGGTTTCTGAGAGTGTGATTGGAAGTCACCCTGAATCAAATAAGAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTGATGACAGTATGGAGGGCTACTAATCCGGATGCTGGAGATGTTCCTATTGGCCTTGGTCTTGGTGATAAGCCAAGGAAAACACTAACCAATGCTGGAAGACAAAAAACTAAACTACCGAATGGGAGAAATAAAATACAAGAAAAGAGGAAGGCTTTCATGCAAAGAAGAGTGGATGTGAGTCAGAATCAACCACAGAAGGAAAAATGTGAACTTGTTTTGGGTAGATTTATAACTGAGGAGGAACTTGACCGAACGTCAATTTTAATTGATGATGAAGAGCTAGAGATGAGAGACTTGCAAGCAGGACCAGATACACATATGTGTTCTGATCATCTCGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTACTGTCTAAGTTCCCCCCAGATACTGTTAAGATGAAGAAACCTATCTGTTCACAACCTTGGGACTCCTCTCCAGAAACTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTTTATACATATGCTACTGTTGTTGATATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGACAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTAGCTGACATTGAAGTGGAACTTACCAGTGGATTTCTGCCTCATTTAAATAAATCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAATCAAGAATATTCTCTGGACTTCTGGAAAAGATCTCTTAACCCCCTTACATGGATAGAAATACTCCGACAAGTTTTGGTTGCTGCTGGTTTTGGTTCAAAACAAGGTTCTTTGCGAAGAGAAGCTCTTAACAAGGAATTGAATCTCCTGGTAAAGTTTGGCTTATGTGCTGGCACCTTGAAGGGCGAGTTGTTTAAAATTTTGTTAGCGCAAGGAAATAATGGGTCAAAGGTATCTGAGCTGGCAAACTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACAACAGAGGAGCTGGAATCCTTAATATGCTCAACCCTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATCTGCTTATCGACTGCGCATGAGCTCTTTTAAGAAGGACATTGATGATATTCAGTCAGATACAGAAGACTCTGGAAGTATAGATGATGAATTTAATGACAGTAATACATGGATCAGTGGTGATGATTTTGAATGTGATTCAAGGAACTCCAGCTTAAGGAAATTTAAGCAGGCAGACAATTCTATAATGAAAAATAATATGCTTACAGCATCCACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGCTGTTAGGATTGATGGAGAGTGAATATTCAGATTTGAGCATTGAAGAAAAATTGAATGCATTAGTCGCTCTAACTGATCTTCTTTCTTCTGGGTCCAGCATTAGGATGAAGGATCCCACTAAAGTTACTGCTGATTACAGTTCAAGCATCCAGTTACGTGGTTCTGGAGCAAAAATAAAGAGGTCAATAGTAAAGAAGCCTGGGTCATATTCGAATCAGATAGGACCAATGCATTATGTTAAAGAAGGGCATTCATCATTTAATCCTCATTCCTATCCAATGGATTCCTCATTATTGGTCTCTAATATCTACAGTAACGAGGAATCCTTTGAGAAGGAGAAAGAAGCAACCAAAATAGGAACCAATTCACACCCCATTAAATCAGTGTTTTTGGGATCTGACCGTAGATACAATAGATACTGGCTTTTCTTAGGGTCTTGCAATGTGGGTGACCCTGGCCACAGGAGAGTTTACTTTGAATCTTCTGAAGATGGCCACTGGGAAGTGATTGATAATGAAGAGACTTTATGTGCCTTGTTGTCAGTTTTAGATGATAGAGGTAAACGAGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAAGGCCCTCTTCGCAGAGCTATGTCTAGGATGATGGTCAACCATGATGGAATGTGTCATACGTCAAATTCTGATCATTCTGATCTTGATAGGATCACTGAGGACAGTTATTCTCCAGTATCTGATGTAGATAACCTGAGCCTAATTGAGACGGCCAGTGACTCTCTAACTTCTGCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAGGGAGCAGAACAAGTGCAAAAGTGGATCCGTCTCCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTGAATCTCAATGTTGTGATTTATGGTAAAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTATTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGTGAAAGAAGACAGTAACACTTTTCCAAATCACAAAATCTTACCATCAAAGATTCAATCACTGAAAGCCGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGATCAGACGACTCAGACGCACTTCGAATTCAACTGAGCTTTTTCAGGTTGTTGCTGATTTTGTTGGTGCTATAAATGAGGATTGGTTGTTTCAGTGCAGTTTTCCTGAGGGTATGGTTGATAAAATCATTGCTTCTTTTGCATTTATGCCCCATACTTCATCAGCTCTTGCTCTATGGTTAGTGAAGTTGGATGCCATAATTGCTCCCTACCTGGACAAAGTCCAGCCTCCGAAGAACCAGGTCATTACAAAAAGAAAATTCTCTGGCGGAGTTTAA 3276 0.4026 MGFQRKTASQRQALHIFFKGEKYPTHREMEDYAGALGLTYKQVQDWFVEQRRREKKKQNGVLVSPCSSSGYNAVTNRNVKKQKKQKSHQELLTADYILKKIFRKDGPSLDEEFDSCPPGLNNSFSVGQEDQGPNKRRKVSESVIGSHPESNKKAPLRKHGIGKGLMTVWRATNPDAGDVPIGLGLGDKPRKTLTNAGRQKTKLPNGRNKIQEKRKAFMQRRVDVSQNQPQKEKCELVLGRFITEEELDRTSILIDDEELEMRDLQAGPDTHMCSDHLASSGILGCSLCKDVLSKFPPDTVKMKKPICSQPWDSSPETVKKLFKVFHFLYTYATVVDICPFTLDEFAQAFHDKDSMLLGKIHVALLTLLLADIEVELTSGFLPHLNKSCNFLALLHSVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGSLRREALNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELANSMQIVELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSSFKKDIDDIQSDTEDSGSIDDEFNDSNTWISGDDFECDSRNSSLRKFKQADNSIMKNNMLTASTEIDESHPGEVWLLGLMESEYSDLSIEEKLNALVALTDLLSSGSSIRMKDPTKVTADYSSSIQLRGSGAKIKRSIVKKPGSYSNQIGPMHYVKEGHSSFNPHSYPMDSSLLVSNIYSNEESFEKEKEATKIGTNSHPIKSVFLGSDRRYNRYWLFLGSCNVGDPGHRRVYFESSEDGHWEVIDNEETLCALLSVLDDRGKREALLVESLEKLKGPLRRAMSRMMVNHDGMCHTSNSDHSDLDRITEDSYSPVSDVDNLSLIETASDSLTSAGAVVIEAGKKGAEQVQKWIRLQAYDSWIWNSFYLNLNVVIYGKRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCRVKEDSNTFPNHKILPSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWIRRLRRTSNSTELFQVVADFVGAINEDWLFQCSFPEGMVDKIIASFAFMPHTSSALALWLVKLDAIIAPYLDKVQPPKNQVITKRKFSGGV 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2808 1091 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 728 800 IPR028941 -
Alju02g2808 1091 CDD homeodomain 4 58 IPR001356 GO:0003677
Alju02g2808 1091 SMART testlast3 315 374 IPR018501 -
Alju02g2808 1091 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 570 664 IPR044977 GO:0006357
Alju02g2808 1091 MobiDBLite consensus disorder prediction 109 159 - -
Alju02g2808 1091 SUPERFAMILY Homeodomain-like 5 67 IPR009057 -
Alju02g2808 1091 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Alju02g2808 1091 SMART HOX_1 2 61 IPR001356 GO:0003677
Alju02g2808 1091 MobiDBLite consensus disorder prediction 177 203 - -
Alju02g2808 1091 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Alju02g2808 1091 ProSiteProfiles DDT domain profile. 315 374 IPR018501 -
Alju02g2808 1091 Gene3D - 2 64 - -
Alju02g2808 1091 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 596 635 IPR028942 -
Alju02g2808 1091 Pfam DDT domain 316 371 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2808 Alju-ChrAlju02 38430488 38443013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2808 217 1082 Homeobox Transcription Factor Family AT1G28420 26.731 5.61e-80 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Alju02g2808 WSD 3.5e-13 No_clan