Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2681 ATGGCTTCTCTGCTACCATACGGCGACGTTGATTTCAGCTTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGCCGCAACGCCATTGGTGGCCTTCACGGCCCTCTCTATTTCGTCACCACCCTCGCTGATGACGGTCCTGGATCCCTTCGGGATGGATGCCGTAGAAAGGAGCCACTCTGGATTGTTTTTGAAGTCTCGGGTACAATTCATCTTTCATCATACTTGAGTGTATCTTCTTATAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGCTTAAGGTTGAAAGAATGTGAGCATATAATTGTATGCAACCTTCAGTTTGAAGGTGGGAGGGGCCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGGTGCAGTCTTTGTGATTACGATGATGGGCTTATAGACATTACAAGACAAAGCACAGATATCACTGTATCAAGATGTTACTTTGCACAGCATGATAAGACCATGCTAATTGGAGCTGACCCATCTCACATCGGCGATCGATGTATCCGGGTGACAATTCATCACTGCTTCTTCGATGGGACACGACAAAGACAACCTCGTGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAATCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAATTAAGAAAAAGACTTTTGAATTTTATAGAGAGAAGGCGGCAGATAAGGCGGAGCAGAAATCTGGGACCATAATATCTGAAGGGGACATGTTTCTGAATGGTGCACAACCATGCTTACAAACACAACACAAAGAAGGATGCAACATGTTCCACCCTTCTGAATATTATCCAACTTGGACTATGGAACCACCCTCACATTCTTTCAAAGATGTTCTGCAAATATGTGCAGGTTGGCAATCTGTTTGTCGGCCGGCCGAAATCTCAACTAATTTGAATTAG 1005 0.4428 MASLLPYGDVDFSLRAMAGRAEGFGRNAIGGLHGPLYFVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECEHIIVCNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLCDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGIKKKTFEFYREKAADKAEQKSGTIISEGDMFLNGAQPCLQTQHKEGCNMFHPSEYYPTWTMEPPSHSFKDVLQICAGWQSVCRPAEISTNLN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2681 334 PANTHER PECTATE LYASE 18-RELATED 15 287 IPR045032 GO:0030570
Alju02g2681 334 SMART amb_all 47 245 IPR002022 -
Alju02g2681 334 Pfam Pectate lyase 76 238 IPR002022 -
Alju02g2681 334 SUPERFAMILY Pectin lyase-like 18 321 IPR011050 -
Alju02g2681 334 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Alju02g2681 334 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Alju02g2681 334 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Alju02g2681 334 Gene3D - 9 315 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2681 Alju-ChrAlju02 32568469 32571942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2681 42 328 Polysaccharide Lyase AT3G55140 81.533 0.0 506