Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2647 ATGGTTCTCTCCAACAAGAAGCTTAAACAGAAGCTTAGAGCGGAATTAGCTCAAACCGAGTCCGCAAATCCAGATTGTTCTTTCAAACCTCTTCTTGACTCTGCGACCCCGAAAGTCCGATTATCCAAGAGAGAGAAGCGCCGAAAGTTTCGCTCTTTGCAACAACTCGACACTACCCAAGAAGGTGGTTGTGGTCGTAGCGGTGATGAGAGTAAAGAAGATGAGGAAACACAGAAGAAGAGCAAAAAGAGGAAAAGGAAGGCTGAGGACAACAGTGTGGAAAATGGGACTGTGAAGGATGCGAAGAAATCGAAGAAGAAACGTGATAAGAAGAAGAACAAGAACAACAAAAAGGCCAAAACGGACCAGGAAAAGGATGCTAATCCTGGAGATGAGAAACTAGAGGCTTCAGAGTTAACTAAGAGTAATGGCAGGGAGCAAAATTTTGATGTTCCTACAAAAGTGTATGTTGGAGGAATCCCCTACTATTCAACTGAGGATGATATTCGAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACATTTCCTGAGACTGGCAAGTTCAGAGGGATTGCCCTTGTTAGTTTTAAGACTGAAGCTGCTGCTAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTCCTTAAAATCCAACCTTACAAAACAACTCGAACCGTTAAAGCATCTGATTTCGCCCCAAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACAGAGGAAGAATTAAGGAGTCTATTCTTAAACTGCAGCATATCCTCCATACGTTTCGGTATGGATAAGGAGACGGGAGAATTCCGAGGATACGCCCACGTGGATTTCACTGATGGTCAATCGGTGAAAACAGCGCTTGCCTTGGACCAAAAGGTGATGCATGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTAAAGAAGCCATGGAAACAAACGACAACTGATGCACCTGCACCTACCAACACCCAAGTTGATAGTGAGCCGTCAAGCTCCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAGCAAACAACTGATGCACCTGCGCCTGCGCCTGCATCCACGAACACCCAAGTTGATAGTGAGAAGCCAAGCTCCACTGGAAGTGGCAAAGTGAAGAGGAGGACGTGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAGCGTTGATTCAAATACAAGCTAG 1314 0.4505 MVLSNKKLKQKLRAELAQTESANPDCSFKPLLDSATPKVRLSKREKRRKFRSLQQLDTTQEGGCGRSGDESKEDEETQKKSKKRKRKAEDNSVENGTVKDAKKSKKKRDKKKNKNNKKAKTDQEKDANPGDEKLEASELTKSNGREQNFDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALVSFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTVKASDFAPKPVEGYNRIYVGNLSWDITEEELRSLFLNCSISSIRFGMDKETGEFRGYAHVDFTDGQSVKTALALDQKVMHGRPVRITCAVPLKKPWKQTTTDAPAPTNTQVDSEPSSSTGSGKMKRRTCFECGEKGHISSACPKKQTTDAPAPAPASTNTQVDSEKPSSTGSGKVKRRTCFECGEKGHISSACPKKQSVDSNTS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2647 437 SUPERFAMILY RNA-binding domain, RBD 241 327 IPR035979 GO:0003676
Alju02g2647 437 Gene3D - 33 235 IPR012677 -
Alju02g2647 437 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 71 227 - -
Alju02g2647 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 317 IPR000504 GO:0003723
Alju02g2647 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 221 IPR000504 GO:0003723
Alju02g2647 437 MobiDBLite consensus disorder prediction 66 102 - -
Alju02g2647 437 MobiDBLite consensus disorder prediction 333 357 - -
Alju02g2647 437 Pfam Zinc knuckle 411 428 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 Pfam Zinc knuckle 360 377 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 MobiDBLite consensus disorder prediction 374 408 - -
Alju02g2647 437 SUPERFAMILY Retrovirus zinc finger-like domains 347 380 IPR036875 GO:0003676|GO:0008270
Alju02g2647 437 Gene3D - 341 391 - -
Alju02g2647 437 ProSiteProfiles Zinc finger CCHC-type profile. 413 428 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 Gene3D - 236 330 IPR012677 -
Alju02g2647 437 CDD RRM1_PHIP1 155 226 IPR034361 -
Alju02g2647 437 MobiDBLite consensus disorder prediction 330 358 - -
Alju02g2647 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Alju02g2647 437 Gene3D - 404 434 - -
Alju02g2647 437 MobiDBLite consensus disorder prediction 17 146 - -
Alju02g2647 437 SUPERFAMILY RNA-binding domain, RBD 151 230 IPR035979 GO:0003676
Alju02g2647 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 324 IPR000504 GO:0003723
Alju02g2647 437 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 SMART c2hcfinal6 412 428 IPR001878 GO:0003676|GO:0008270
Alju02g2647 437 SMART rrm1_1 249 320 IPR000504 GO:0003723
Alju02g2647 437 SMART rrm1_1 154 226 IPR000504 GO:0003723
Alju02g2647 437 SUPERFAMILY Retrovirus zinc finger-like domains 400 432 IPR036875 GO:0003676|GO:0008270
Alju02g2647 437 MobiDBLite consensus disorder prediction 374 410 - -
Alju02g2647 437 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2647 Alju-ChrAlju02 31584923 31588673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2647 153 322 Eukaryotic Initiation Factors Gene Family AT3G16380 30.387 3.86e-08 53.5