Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2429 ATGGAAGAAGGTGGTTCTAATGGGACTTCAAGTGTGATGGGTTTTGGGGATAACAGTAATAACAATAGTAGTGGTGCCGGGTTGTGTGCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCACTCCTAATCCTATGAATATTAATGCCCCTCCTTCACACACTACTCCTCCTTTCCATCATATGAATAATACTTCTACTTCCAATCATCAACCCCAAAACAACAACAACAATAACAGTTGTGGGTTAGTCTCCTTTCTCATGGAAGCCAACAACAACAACAACAACGCTGGCTCTTCTTCTTCTGCTGCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTACGTTAATTGTCAAAAGGTTGGAGCGCCGCCGGAAGCGGTGGCGAGGTTGGAGGAAGCATGTGCGTCTGCGTTGACAATGACCGGCGGCGGCGGAGGAGGGTCGGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCTTATTGTGAGATGCTGACCAAATATGAGCAAGAGCTCTCCAAACCCTTCAGGGAAGCTATGCACTTCCTTCACACCATCGAGTCTCAGTTCAAATCTCTCACTATTTCTTCTTCTTCGGACTTCGCTTGTGGTGAGGGAAGTGATCGGAATGGATCATCGGAAGAAGACATGGATGTGCCGAAGAGTCTGATCGATCCACTGGCGGACGACCAAGAATTGAAGGGGCAACTTCTTCGCAAGTACAGTGGATACCTGGGCAGCCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCTAAAGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAGGCACTACAAATGGCCTTACCCATCAGAGTCGCAGAAGCTGCAACTGGCAGAATCAACAGGATTGGATCAGAAGCAAATAAACAATTGGTTCATTAATCAAAGGAAGCGTCATTGGAAACCATCGGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCACTATTACATGGACACTGTTCTTGGCAATCCCTATCAAATGATCTAG 1116 0.4633 MEEGGSNGTSSVMGFGDNSNNNSSGAGLCASSHPMMMMMPFVTTCHNVSHQIPFTPNPMNINAPPSHTTPPFHHMNNTSTSNHQPQNNNNNNSCGLVSFLMEANNNNNNAGSSSSAAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMTGGGGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFREAMHFLHTIESQFKSLTISSSSDFACGEGSDRNGSSEEDMDVPKSLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLQLAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYQMI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2429 371 Pfam KNOX2 domain 172 219 IPR005541 GO:0003677|GO:0005634
Alju02g2429 371 SMART HOX_1 279 344 IPR001356 GO:0003677
Alju02g2429 371 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Alju02g2429 371 MobiDBLite consensus disorder prediction 66 93 - -
Alju02g2429 371 Pfam ELK domain 257 278 IPR005539 GO:0003677
Alju02g2429 371 MobiDBLite consensus disorder prediction 62 93 - -
Alju02g2429 371 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Alju02g2429 371 Gene3D - 275 347 - -
Alju02g2429 371 SMART ELK_2 257 278 IPR005539 GO:0003677
Alju02g2429 371 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Alju02g2429 371 CDD homeodomain 289 341 IPR001356 GO:0003677
Alju02g2429 371 MobiDBLite consensus disorder prediction 1 21 - -
Alju02g2429 371 SUPERFAMILY Homeodomain-like 279 356 IPR009057 -
Alju02g2429 371 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Alju02g2429 371 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Alju02g2429 371 Pfam KNOX1 domain 120 157 IPR005540 GO:0003677|GO:0005634
Alju02g2429 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 346 - -
Alju02g2429 371 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Alju02g2429 371 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2429 Alju-ChrAlju02 25380751 25385681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2429 100 370 Homeobox Transcription Factor Family AT1G62360 74.021 2.72e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju02g2429 KNOX2 2e-22 No_clan