LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g2418	ATGACCATAAAATCAAACACCAAATTATTGGTTTGTCTTTTGTTTTTAATTCTGATTCTGATTCTCAGAGTCGAAGCTTACTGTATCTCCGGTTGCAAGCTTGCTTTAGCTTCGTACTACGTCTGGGAAGGCGCAAATCTCACATACATAAGCGAAATCTTCGGCCAGGAAATTTCTGAGATTCTCAAATACAATCCAACAATCCCTAATCCGGATTATGTTCGGAGCACAACCCGAATCAACGTGCCGTTTACGTGCGATTGCTTGAACGGCGTCTTCTTAGGTCACACTTTCACTTACAAAACCCAACCCGGCGATACGTACCATAAAATTGCTGAGCAGGCTTTTTCTAGCCTGACGACCGAGAATTGGTTGGAGAGAGTGAATCGGTATGAAGCTACTGGTATACCGGAAAACGTTGGGATTAACGTCACCGTCAATTGCTCGTGCGGCAATAGGCACGTGTCGAGGGATTATGGATTGTTTCTGACGTACCCACTCCAGAGCAGCGACAGCTTGCCGGAGCTAGCGGCGGCTTCCGGTGTGCGGGCGGAGCTCATACAGAGGTATAATCCGGCCTCTGATTTCAACGCGGGAAGTGGCCTGGTGTTTGTGCCGGCGAAAGGAATATCAGGGGGAGCCATTGTTGGAATATGTATTGGAGCAGTTTGTGGGGTTTTAATATTGGCACTTGTTCTTTACGTTATTGTTTATAGAAGCAAGAAAGTGTCTGAGGCTTCCCTTCTTCCTCCTCCATCTCAAGATCACTATCTTCATCAGATTGGACAAGGTTCAGGAAGGAACTTGGAGAAGGCTTCAGAATCTATTGATGTGGCTTCTCCAAGGCTGACAGGAATCACAGTAGACAAGTCAGTAGAGTTCTCATTTGAGGAGCTTTCCAAAGCTACCAATGGCTTTTCTATTTCCAATAAGATCGGTCAAGGTGGCTTTGGATCTGTTTACTACGCAGAGCTTCGAGATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCTTCAAAAGAATTCCTTGCTGAACTCAAGGTTCTCACACATGTTCACCACTTGAACTTGGTACGCTTAATAGGGTATTGTGTTGAGAGCTCTTTATTTTTGGTTTATGAGTACGTTGAGAATGGAAATTTAGGCCAACATTTACGTGGTTCAGGAAGAGAATCACTTTTATGGCCAACCAGAGTTCAAATCGCCCTGGACGCAGCGAGAGGACTCGAATACATCCACGAGCATACAGTTCCTGTCTACATTCATCGCGACATTAAATCAGCCAACATTTTGATTGATAAGAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTGGCAAGACTTACTGAATATGGAAGTTCTTCACTTCATACACGACTTGTGGGTACATTTGGCTATATGCCTCCAGAATATGCGCAATACGGTGACGTTTCGGCCAAAGTAGACGTATATGCTTTCGGAGTAGTGCTATATGAACTCATATCTGCCAAGGAAGCTATTGTAAAGACAAAAGAGCCTGAGAACGAATCGAAAGGACTAGTTTCCTTGGTTTTTGAAGAGGTTTTAGCTCAGCCAAACGAGGAAGAACAGCTTCGTAAGCTTGTTGATCCTAGGCTTGGTGCTAACTACCCTTTTGAATCGGTATATAAGATGGCTCAACTTGCAAAAGCATGCACACATGATAATGCACAACTAAGGCCAAGCATGAGATCCATTGTAGTTGCACTTATGACACTTTCTTCTTCCACTGAGGATTGGGATGTTGGCTCCTTTTATGAATCCCAACCTATGATGCATCTCATTTCTGGAAGGTAG	1818	0.4406	MTIKSNTKLLVCLLFLILILILRVEAYCISGCKLALASYYVWEGANLTYISEIFGQEISEILKYNPTIPNPDYVRSTTRINVPFTCDCLNGVFLGHTFTYKTQPGDTYHKIAEQAFSSLTTENWLERVNRYEATGIPENVGINVTVNCSCGNRHVSRDYGLFLTYPLQSSDSLPELAAASGVRAELIQRYNPASDFNAGSGLVFVPAKGISGGAIVGICIGAVCGVLILALVLYVIVYRSKKVSEASLLPPPSQDHYLHQIGQGSGRNLEKASESIDVASPRLTGITVDKSVEFSFEELSKATNGFSISNKIGQGGFGSVYYAELRDEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVESSLFLVYEYVENGNLGQHLRGSGRESLLWPTRVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLARLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSAKVDVYAFGVVLYELISAKEAIVKTKEPENESKGLVSLVFEEVLAQPNEEEQLRKLVDPRLGANYPFESVYKMAQLAKACTHDNAQLRPSMRSIVVALMTLSSSTEDWDVGSFYESQPMMHLISGR	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g2418	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Alju02g2418	605	SMART	serkin_6	306	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g2418	605	SUPERFAMILY	Protein kinase-like (PK-like)	285	577	IPR011009	-
	Alju02g2418	605	FunFam	PTI1-like tyrosine-protein kinase 3	377	591	-	-
	Alju02g2418	605	ProSitePatterns	Protein kinases ATP-binding region signature.	312	334	IPR017441	GO:0005524
	Alju02g2418	605	ProSiteProfiles	Protein kinase domain profile.	306	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g2418	605	Pfam	Protein tyrosine and serine/threonine kinase	308	576	IPR001245	GO:0004672\|GO:0006468
	Alju02g2418	605	Gene3D	Phosphorylase Kinase; domain 1	291	376	-	-
	Alju02g2418	605	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	10	591	IPR044812	GO:0019199\|GO:0045087
	Alju02g2418	605	Gene3D	Transferase(Phosphotransferase) domain 1	377	593	-	-
	Alju02g2418	605	FunFam	LysM receptor kinase 2	285	376	-	-
	Alju02g2418	605	CDD	STKc_IRAK	312	574	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g2418	Alju-ChrAlju02	25227548	25234598	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g2418	10	605	Receptor kinase-like Gene Family	AT3G21630	55.538	0.0	662

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Alju02g2418		PK_Tyr_Ser-Thr	3.3e-48	CL0016