Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2351 ATGGATTTGTTGTTGATGTTTTCCTGTGGTATTGAGAACAAAGAAGGAAGCTTCGAAGCAGTGGATGAGGTTGAGGTTGCTAGTGTGGTGAAGCTCAAAGCCAAAGTTGCCAAGGATAGGCAGACCTACCACTTGTTCTCAACATGGACGACAATGAAGAGATCATTGATGAGTTTCATAGTGTCAAGCTATGGTGGAGCTTCTTTTGCTCTCTTTCATTGTCGTTCACTCTCTTATCTCCCGAGAATTCCAGATTTCTTCCCAACGATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCACCCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCTATGTGGGCTTCTTCTGCCCAGCCCCCGCCGCCACAGCAGGCCGTTGCTCCACCGCAATCCACCCAACATGTCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTACCTGTATAATTGTTTTGCGCATACAGGCGAGGTGGCTTCTGTGAAAGTCATTCGTAATAAGCAAACTAATGCATCGGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCTGCCGCAGAGAGAATTCTTCAAACATTTAATGGCAATATTATGCCTAATGGTGGGCAAAACTATAGATTGAATTGGGCAACTTTTAGTTCTGGTGATAGGCGTCATGATGATAGTCCAGATTACACAATTTTTGTTGGAGACTTGGCTGCCGATGTCACTGATTACCTGCTGCAGGAGACGTTTCGGGCTAGATATCCCACAGTTAAGGGTGCAAAGGTTGTAATTGATAGGCTCACTGGGAGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGTTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTTGGCAATTTGGATCCTAATGTCACTGATGATCATTTGAGGCAAGTTTTTGGTAATTACGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCCGATAGGAGTTGTGCTGAAGAGGCTCTGCGGATTCTGAATGGAACACAGTTGGGCAGTCAAAGTGTGCGACTTTCATGGGGCCGCAGTCCTTCAAACAAGCAGGCTCAGCCAGATCCAAGCCAGTACGGGGGATATTATGGGTATGCTCAAGGGTATGAGAATTATGGATACCCTCCTGCTGCTACACAGGACCCCAACATGTATGGAAGCTATCCGGGTTATGCCAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA 1473 0.4671 MDLLLMFSCGIENKEGSFEAVDEVEVASVVKLKAKVAKDRQTYHLFSTWTTMKRSLMSFIVSSYGGASFALFHCRSLSYLPRIPDFFPTMMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWASSAQPPPPQQAVAPPQSTQHVQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNASEGYGFIEFYTRAAAERILQTFNGNIMPNGGQNYRLNWATFSSGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPTVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGNYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGSQSVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2351 490 FunFam Polyadenylate-binding protein RBP45 99 244 - -
Alju02g2351 490 SUPERFAMILY RNA-binding domain, RBD 236 348 IPR035979 GO:0003676
Alju02g2351 490 MobiDBLite consensus disorder prediction 121 154 - -
Alju02g2351 490 SMART rrm1_1 359 426 IPR000504 GO:0003723
Alju02g2351 490 SMART rrm1_1 254 328 IPR000504 GO:0003723
Alju02g2351 490 SMART rrm1_1 161 236 IPR000504 GO:0003723
Alju02g2351 490 Gene3D - 334 439 IPR012677 -
Alju02g2351 490 MobiDBLite consensus disorder prediction 424 443 - -
Alju02g2351 490 MobiDBLite consensus disorder prediction 94 113 - -
Alju02g2351 490 MobiDBLite consensus disorder prediction 469 490 - -
Alju02g2351 490 Gene3D - 252 328 IPR012677 -
Alju02g2351 490 SUPERFAMILY RNA-binding domain, RBD 137 239 IPR035979 GO:0003676
Alju02g2351 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 240 IPR000504 GO:0003723
Alju02g2351 490 FunFam Polyadenylate-binding protein RBP45C 245 335 - -
Alju02g2351 490 FunFam Polyadenylate-binding protein RBP45C 336 440 - -
Alju02g2351 490 CDD RRM2_SECp43_like 252 331 - -
Alju02g2351 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 423 IPR000504 GO:0003723
Alju02g2351 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 318 IPR000504 GO:0003723
Alju02g2351 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 226 IPR000504 GO:0003723
Alju02g2351 490 Gene3D - 97 248 IPR012677 -
Alju02g2351 490 CDD RRM1_SECp43_like 161 241 - -
Alju02g2351 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 332 IPR000504 GO:0003723
Alju02g2351 490 MobiDBLite consensus disorder prediction 424 440 - -
Alju02g2351 490 MobiDBLite consensus disorder prediction 476 490 - -
Alju02g2351 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 430 IPR000504 GO:0003723
Alju02g2351 490 MobiDBLite consensus disorder prediction 327 357 - -
Alju02g2351 490 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 150 443 - -
Alju02g2351 490 SUPERFAMILY RNA-binding domain, RBD 343 456 IPR035979 GO:0003676
Alju02g2351 490 MobiDBLite consensus disorder prediction 332 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2351 Alju-ChrAlju02 24178798 24184686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2351 161 437 Eukaryotic Initiation Factors Gene Family AT4G34110 27.305 7.23e-27 112