Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2340 ATGGACTCTCAAAGGTTGTTGCTTTCCCGAGAAAACCCTAGGCCCCTGGGTTTCCCTGCTGGGCGAGTACTCCCTTCTCCCACTGTAAAATCCATGCCCGGTGAGGTGGCTCAGAAGCCAATTGCTCCGGCCATATTGGAACGGTTCAAGGCTCTGCTCAAGCGGCGCTACGATGAACGGGGGTCTTTGGCAGACGACGATGTGCCGCAGCTTCCCACTGAGGAGATTGTGCAGCTTTACGAGATAGTCTTGTCTGAGCTTACTTTAAATTCGAAGCCCATCATCACCGAACTTACCATCATTGCAGGAGACCATAAAGAGCATGGCAAGGGTATAGCTGATGCAATTTGCGATCGAATTCTCGAGGTGCCTTTGGAGCAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCCTCACGTCTTCCTGACGTGTTCTGTGAGGCATATCGACAAGTTCAGCCTAATTTGCATCATGCAATGCGTCATCTCTTTGGTACCTGGTCTACGGTCTTCCCAACTTCTGTTCTCCGCAAGATTGAAGGACAGTCGTGTTTTTCTCAAGCGGTTAATAATCAGAATATATCATCTAGCATTAATCCCCCTCGGGTGTCTGAGACCACACAGCGAACTCATGGCATTCATGTTAATCCAAAATACTTGCGACAGCTGGAAAACTCAACTATGGACACTGATGGGGGTGAAATGTTGGATTCAACAGGAAGCGTGGGGCATACAAATTTTGGCCTTGGAACTAATAAGATGCATCAGGCTTCAATTAGCAGGCAGGGAAAACACTATCCTGTTGATGGCCAGAATCAATTCCAATTTTCTACAAATGGACCTCAACGCCAAAGTCCAAGAGCTCTTATTGATGCTTATGGAAGTGACAATAGGACAGAAACCTCAAGCAATAAGCCATTGGTTGAACCGCTTGACATACATGGTATAGAAAACAAGATGGTGTCACCATCATGGCAGAATACTGAAGAGGAGGAGTTTAACTGGGAAGATATGAGTCCAACGGTAGTGGAGCATAAGAGAAGCAATGGTATCTTACCGTCAATTATGTCATCTAGGGAAATATCTAGTGGTATTGTTGCAGCTAATACTGCTGCTTTGGGTCAAGATGCCAGAAGTGATTGGAATGGTGGTGGATCATTGGGTCAGATAACTGGATTCCATAATCACGGTCTGGTCTCCCGTCCTCCTCATGATGTCTTGAAGATTTCTCATCATTTGCCTAGTTCACAACACCTCGTCAACATTAGAGGTCAAACAAGGAATGCTCATGTGTCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTCATATGGGCTTGAGATTCGTCCACCAACTTTACCTGCATCTTTCCGAACTAGGCCCCCTGTAAATGTGCATGCTAGTCGTCCAACCTCCTTAAATCCTTCATTGCCGAAACATGTTAGGAACCAATTTGAAGCAATAAATAGTAGTAACACCATTTTAGATCAAGGTCCAACTAAATCTTTATTCATTCCTGAACAGCCATTGGACAGTGGTGAGAACAATATTGGTAAATTGGCGATTCCTCTGATTCCTAATCAGCTATCAGAGCTAATTTCATCAAACCAGCGTAACCGTGGGCAAGCATCACAACCTCAAATTTTTCCACCTCAGGGTGTGCGAGAACTTTTTGTTGATTCGCAAGCTCCTGCAGCTTCTCAATTTAGTCATGGGGGCTCTTTGCAAAGACATGGTGCTGCTATCAGTGCAACTGGGTCGATGTCATTACCTATTGGTCAGTTTCCTTTACCAGTCCAAAACATGACAAACAACACCTTTCCTATACAGCAGGGAGCCTTGCCTCCATTTCCAGCTCCCCGTCCTCCATCACAAGCATTGCCTCGTACAAATGGTAGTCCATATACCTCAAGCCAACAGCCAGCTGGTCCATTTTCTGGTCTTATAAGTTCACTTATGGCACAAGGTTTGATTTTCTTGACTGGACAAACCCCTGCACAGGGTTCTGTTGGAACTGAATTTAATCTTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAGTGCTTTATATTCTGATCTCCCTCGACAATGCACAACTTGTGGCCTTCGATTCAAGTCTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGGCTAAAAATCGTAAGCAGAAGTCTTCTCGTAAGTGGTTTGTGAGTGAGAAAATGTGGCTTAGTGGTGCAGAGGCACTGGGCACAGAAGCAGCGCCTGGTTTTTTGCCAACCGAGACCGTGGAGGAAAATGAAGAAGATGAAGAGATGGCTGTGCCGGCTGACGAAGAGCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAAAGGTGCTGTATACCTCAATGTGCCCAAGGGAACAGTGGCAGGCATGGATAGGTCACAGTTAGGTCCAATTGTTCATGCTAAATGCAGATCTGAATCTAATGCTGTCCCTGCTGAAGAATTTAGAGAGGATGACGGGGGCGCTGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2637 0.4501 MDSQRLLLSRENPRPLGFPAGRVLPSPTVKSMPGEVAQKPIAPAILERFKALLKRRYDERGSLADDDVPQLPTEEIVQLYEIVLSELTLNSKPIITELTIIAGDHKEHGKGIADAICDRILEVPLEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPDVFCEAYRQVQPNLHHAMRHLFGTWSTVFPTSVLRKIEGQSCFSQAVNNQNISSSINPPRVSETTQRTHGIHVNPKYLRQLENSTMDTDGGEMLDSTGSVGHTNFGLGTNKMHQASISRQGKHYPVDGQNQFQFSTNGPQRQSPRALIDAYGSDNRTETSSNKPLVEPLDIHGIENKMVSPSWQNTEEEEFNWEDMSPTVVEHKRSNGILPSIMSSREISSGIVAANTAALGQDARSDWNGGGSLGQITGFHNHGLVSRPPHDVLKISHHLPSSQHLVNIRGQTRNAHVSPIDSIPITKVNSYGLEIRPPTLPASFRTRPPVNVHASRPTSLNPSLPKHVRNQFEAINSSNTILDQGPTKSLFIPEQPLDSGENNIGKLAIPLIPNQLSELISSNQRNRGQASQPQIFPPQGVRELFVDSQAPAASQFSHGGSLQRHGAAISATGSMSLPIGQFPLPVQNMTNNTFPIQQGALPPFPAPRPPSQALPRTNGSPYTSSQQPAGPFSGLISSLMAQGLIFLTGQTPAQGSVGTEFNLDVLKIRHESAISALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMAKNRKQKSSRKWFVSEKMWLSGAEALGTEAAPGFLPTETVEENEEDEEMAVPADEEQNTCALCGEPFEEFYSDETEEWMYKGAVYLNVPKGTVAGMDRSQLGPIVHAKCRSESNAVPAEEFREDDGGADEEGSQRKRMRS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2340 878 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Alju02g2340 878 MobiDBLite consensus disorder prediction 851 878 - -
Alju02g2340 878 SUPERFAMILY ENTH/VHS domain 73 192 IPR008942 -
Alju02g2340 878 MobiDBLite consensus disorder prediction 848 878 - -
Alju02g2340 878 MobiDBLite consensus disorder prediction 617 656 - -
Alju02g2340 878 Gene3D - 69 196 IPR008942 -
Alju02g2340 878 MobiDBLite consensus disorder prediction 1 34 - -
Alju02g2340 878 SMART 558neu5 75 197 IPR006569 -
Alju02g2340 878 MobiDBLite consensus disorder prediction 627 641 - -
Alju02g2340 878 ProSitePatterns Zinc finger C2H2 type domain signature. 712 732 IPR013087 -
Alju02g2340 878 MobiDBLite consensus disorder prediction 467 492 - -
Alju02g2340 878 MobiDBLite consensus disorder prediction 642 656 - -
Alju02g2340 878 CDD CID_Pcf11 77 195 IPR047415 -
Alju02g2340 878 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 867 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Alju02g2340 878 FunFam polyadenylation and cleavage factor homolog 4 69 196 - -
Alju02g2340 878 Pfam CID domain 86 190 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2340 Alju-ChrAlju02 24061396 24068667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2340 1 878 C2H2 Transcription Factor Family AT4G04885 43.926 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g2340 CID 2.2e-11 CL0020