Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2329 ATGAACAAATTCCCAACTTTGCCGCCTCTGCAGCCACTTCTGACCCAGGCTCAAGCCCCTTCACCCTTCGCATTTCAATTTCGTCTACATTTGTTTTGTGAGAAAGTCTACCAAAGCTTCTTCAAGATGCAAATCTTCGTTAAGACCCTTACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGATCAGCAGCGATTGATCTTTGCCGGAAAACAGCTAGAAGACGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGGACCCTTGCCGACTACAACATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGACTCCGTGGTGGCATGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTTGAGAGCTCCGACACCATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGAGGTTGATCTTTGCGGGAAAGCAGCTCGAGGATGGCAGGACCCTTGCAGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTGAGAGGAGGAATGCAGATTTTTGTCAAGACCCTGACCGGTAAGACCATCACTTTGGAGGTTGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTAGCAGATTACAATATCCAGAAGGAATCAACCCTTCACCTAGTCCTCCGTCTGAGAGGAGGAATGCAGATATTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTGGAGAGCTCCGACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAACAGAGGCTCATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTTCGTGGTGGTAACTAA 1272 0.5275 MNKFPTLPPLQPLLTQAQAPSPFAFQFRLHLFCEKVYQSFFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2329 423 Pfam Ubiquitin family 45 116 IPR000626 GO:0005515
Alju02g2329 423 Pfam Ubiquitin family 197 268 IPR000626 GO:0005515
Alju02g2329 423 Pfam Ubiquitin family 273 344 IPR000626 GO:0005515
Alju02g2329 423 Pfam Ubiquitin family 121 192 IPR000626 GO:0005515
Alju02g2329 423 Pfam Ubiquitin family 349 420 IPR000626 GO:0005515
Alju02g2329 423 SUPERFAMILY Ubiquitin-like 117 194 IPR029071 -
Alju02g2329 423 CDD Ubl_ubiquitin 119 194 - -
Alju02g2329 423 SUPERFAMILY Ubiquitin-like 42 118 IPR029071 -
Alju02g2329 423 ProSitePatterns Ubiquitin domain signature. 69 94 IPR019954 -
Alju02g2329 423 SUPERFAMILY Ubiquitin-like 269 346 IPR029071 -
Alju02g2329 423 PRINTS Ubiquitin signature 74 94 IPR019956 -
Alju02g2329 423 PRINTS Ubiquitin signature 95 116 IPR019956 -
Alju02g2329 423 PRINTS Ubiquitin signature 53 73 IPR019956 -
Alju02g2329 423 CDD Ubl_ubiquitin 271 346 - -
Alju02g2329 423 FunFam Polyubiquitin 3 195 270 - -
Alju02g2329 423 FunFam Polyubiquitin 3 119 194 - -
Alju02g2329 423 SUPERFAMILY Ubiquitin-like 195 270 IPR029071 -
Alju02g2329 423 ProSiteProfiles Ubiquitin domain profile. 347 422 IPR000626 GO:0005515
Alju02g2329 423 ProSitePatterns Ubiquitin domain signature. 221 246 IPR019954 -
Alju02g2329 423 ProSiteProfiles Ubiquitin domain profile. 271 346 IPR000626 GO:0005515
Alju02g2329 423 PANTHER UBIQUITIN 195 272 - -
Alju02g2329 423 ProSiteProfiles Ubiquitin domain profile. 43 118 IPR000626 GO:0005515
Alju02g2329 423 FunFam Polyubiquitin 3 43 118 - -
Alju02g2329 423 FunFam Polyubiquitin 3 271 346 - -
Alju02g2329 423 CDD Ubl_ubiquitin 43 118 - -
Alju02g2329 423 ProSiteProfiles Ubiquitin domain profile. 195 270 IPR000626 GO:0005515
Alju02g2329 423 ProSitePatterns Ubiquitin domain signature. 373 398 IPR019954 -
Alju02g2329 423 ProSiteProfiles Ubiquitin domain profile. 119 194 IPR000626 GO:0005515
Alju02g2329 423 CDD Ubl_ubiquitin 195 270 - -
Alju02g2329 423 Gene3D - 37 118 - -
Alju02g2329 423 Gene3D - 271 346 - -
Alju02g2329 423 Gene3D - 195 270 - -
Alju02g2329 423 Gene3D - 347 423 - -
Alju02g2329 423 Gene3D - 119 194 - -
Alju02g2329 423 CDD Ubl_ubiquitin 347 422 - -
Alju02g2329 423 ProSitePatterns Ubiquitin domain signature. 145 170 IPR019954 -
Alju02g2329 423 SMART ubq_7 119 190 IPR000626 GO:0005515
Alju02g2329 423 SMART ubq_7 195 266 IPR000626 GO:0005515
Alju02g2329 423 SMART ubq_7 271 342 IPR000626 GO:0005515
Alju02g2329 423 SMART ubq_7 347 418 IPR000626 GO:0005515
Alju02g2329 423 SMART ubq_7 43 114 IPR000626 GO:0005515
Alju02g2329 423 FunFam Polyubiquitin 3 347 422 - -
Alju02g2329 423 SUPERFAMILY Ubiquitin-like 346 422 IPR029071 -
Alju02g2329 423 ProSitePatterns Ubiquitin domain signature. 297 322 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2329 Alju-ChrAlju02 23887149 23889187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2329 347 422 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 6.64e-47 155