Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2304 ATGAAGAGAAAGTCAAGTTCAGGTCGCCAAAAGATCCCAATAGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACCTTCTCAAAGCGTCGCTCAGGGCTGTTCAAGAAAGCCAGCGAGCTTTGCACTCTCTGCGGCGTCGAGATCGCCATCATCGTCTTCTCTCCAGCCGACAAGGCCTTCTCCTTCGGCCACCCGGAGGTGGAATCCATCATCGACCGCTACATCAGCCGAAACCCTACGTCGGAATCCGGGGCCCACCACCCGCTGGTGGAGGCCCACCGGAACGCGAACGTCCGGGAGCTGAACATGCAGCTGACACAGCTCCTAGGGCAAGTGGAAACGGAGAGGAAGAGAGGAGAAGAGCTAGATCAGGTGAGGAAGGCGAGGCAGAGACAGTTTTGGTGGGAAAACCCTATCGAGGAATTAGGGTTTAATGAGTTGCAACAAGTTTTGGTTTCAATGGAGGAACTGAAGAAGGAGATAGGGAAAATGGCGAGCGAGATGATGATGGAGCATAACAGTTTGGCTTCTGATTCATCAGTTATTGTTGGAGGAGCTCATATTAATGGTGGACTACTTGGACGCTATAATAATAATGATGTGTTTGAGGATAAACATGTTATTATTAACAGTATTAATGCTTCTTCTTCCTCCAGTAATAATATTCTTCCTCAACATGCCTATAACAACAATCTCAATTGTAGGCATGGATATCTTTGA 723 0.4744 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYISRNPTSESGAHHPLVEAHRNANVRELNMQLTQLLGQVETERKRGEELDQVRKARQRQFWWENPIEELGFNELQQVLVSMEELKKEIGKMASEMMMEHNSLASDSSVIVGGAHINGGLLGRYNNNDVFEDKHVIINSINASSSSSNNILPQHAYNNNLNCRHGYL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2304 240 Coils Coil 99 119 - -
Alju02g2304 240 Gene3D - 87 182 - -
Alju02g2304 240 SUPERFAMILY SRF-like 8 92 IPR036879 GO:0003677|GO:0046983
Alju02g2304 240 Gene3D - 19 86 IPR036879 GO:0003677|GO:0046983
Alju02g2304 240 PANTHER MADS BOX PROTEIN 9 164 - -
Alju02g2304 240 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Alju02g2304 240 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Alju02g2304 240 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Alju02g2304 240 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Alju02g2304 240 Coils Coil 148 168 - -
Alju02g2304 240 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Alju02g2304 240 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Alju02g2304 240 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Alju02g2304 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2304 Alju-ChrAlju02 23354781 23355503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2304 4 228 Type I MADS-box Gene Family AT5G60440 45.726 1.04e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju02g2304 SRF-TF 3.1e-23 No_clan