Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2303 ATGGCAGACGCAGAACCAGTTCCTCCGAAGAAGACGAAAGGCCAGCAGAAAATTGAAGTTAAAGCGATGGACGACGCTAAGAAGCGAAGTGTCACATTCACAAAACGCAAAGCAGGCCTATTCAGGAAGGCAGACCAGCTGTGCAAGCTCACCGGCGCCGAGGTGGCTCTCATGGTGATATCTCCGGGAGGCAAGCCTTACACATTCGGCAATCCCGACATGGACACAGTGATATCGAGGTACAAGAGTCACGCGCCGGCGTCGGAGACGTTAGAGCGGCAGAAAGCGGAGCTCAGGGAAATCATGGAACAGCTGGCGTACGAGGATAGGCGAGCTCATCAACTGAGGAATAATAGGCGACATATGATGACAGAAACGTGGATGGCTGCACCAACTCAAACATTTTCTCCTCCTCAACAAGAGATGATTAGGGAGCGAATGGAGCAACTGAACAATGTGCTCTCTCTAGGCTTCAACTCATTTGGATTGTGGTGGCCGCCTCCGGATTCCACGTTGCCTGAGCTCCAGGCGAGTTCTGGGCTTTCATGTGGGTCCTTCATGGCCCCGGTGACTGAAAGTCAGAATTTTGGGCGTAACATGTTACTTACACCCTCTGGTAACTTCTACACTGGTGAATCGTGGTCTGCGGCGGTACCTGCTGGGTCTCAGAATCTTACAGACAACATGATGCTGAACACCCCTGGAAGCTTCTACACAGACGAATCATCGTCAATGGCGCCGGGGGGTACTCAGAATCAAATGTCAGAGGGTAACATTGTACTTACACCTCCAGGTAACTTCTACACAAGCGAACCGTCGTCTATGTTGCCGACGGAGAATCAGAATCATGTTTTTGAGGATAGCATGATGGTTACAACTCCTGGTAACTTCTACACAGGCGAATTGCCGGCAGACACTCTGAATGATCATATGTTTCAGAATAACATGATGCTGGACGACAATGGCAGCTTCTACACATGTGGACCCTCGTCAATGGCGTCGGAACCTCAGAGCACACTATTTGATAATAATATGGTCTTTTCACCTAATGATAACTTCTTTACAAGTGGATTCTTGTCGGAAGAACCGACTATGAATCAAATGATTCGTGAAAACATTATGATTCCTCCAAATAATAACTTCTATACATGTGGACCCTCAGCGGTGGTGCCACCACCTGCCTATGAGAATAAAATATTTGATGAAAACATTATGGTTCCTCCATATGACAATTTCTATACAAGCGGATCCTTGGCTGTGGTGCCACCGCCGGCTTATGAGAATCAAATATTTGATGAAAACATTATGGTTCCTCCATATGACAATTTGAGGTTGCTTCTAGATGATGGTCGATTCTATGGAAGCAGTTCTTCTATGGTGCCACCAGCGGAGAATCAAATGTTTGATGGAAATGTGGTGGCGCCGCTGCAGCGTCCGCCTTGTGATGGATATGGTGCTGGACCTTCAGGGTTCAATTGA 1479 0.478 MADAEPVPPKKTKGQQKIEVKAMDDAKKRSVTFTKRKAGLFRKADQLCKLTGAEVALMVISPGGKPYTFGNPDMDTVISRYKSHAPASETLERQKAELREIMEQLAYEDRRAHQLRNNRRHMMTETWMAAPTQTFSPPQQEMIRERMEQLNNVLSLGFNSFGLWWPPPDSTLPELQASSGLSCGSFMAPVTESQNFGRNMLLTPSGNFYTGESWSAAVPAGSQNLTDNMMLNTPGSFYTDESSSMAPGGTQNQMSEGNIVLTPPGNFYTSEPSSMLPTENQNHVFEDSMMVTTPGNFYTGELPADTLNDHMFQNNMMLDDNGSFYTCGPSSMASEPQSTLFDNNMVFSPNDNFFTSGFLSEEPTMNQMIRENIMIPPNNNFYTCGPSAVVPPPAYENKIFDENIMVPPYDNFYTSGSLAVVPPPAYENQIFDENIMVPPYDNLRLLLDDGRFYGSSSSMVPPAENQMFDGNVVAPLQRPPCDGYGAGPSGFN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2303 492 Coils Coil 88 111 - -
Alju02g2303 492 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 Gene3D - 26 96 IPR036879 GO:0003677|GO:0046983
Alju02g2303 492 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 PANTHER MADS BOX PROTEIN 16 150 - -
Alju02g2303 492 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
Alju02g2303 492 SUPERFAMILY SRF-like 14 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2303 Alju-ChrAlju02 23325010 23326488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2303 10 217 Type I MADS-box Gene Family AT5G60440 33.175 1.15e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju02g2303 SRF-TF 3.2e-19 No_clan