Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2302 ATGTCGTCGAGCTCGAACAATGGAGGAGGAGGAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATAAAGAAGATGGAGAACGAAAGCAACCTGCAAGTCACCTTCTCGAAGCGACGAGCTGGTCTCTTCAAGAAGGCCAGTGAGCTTTGTACTCTCTGTGGCGTTGAGGTCGCCATTATCGTCTTCTCTCCGGGCGAGAAGGCTTACTCGTTTGGCCATCCGAGTGTTGATGCTGTGTTGGACCGATTCCTGAATGGCGGCGTGCCGCCAATGCCTCCGTCGGCTTCCATGCAGATGATGGAAGCTCACCGGCGGGCTGCCGTCCAGGAGCTTAACGCTCAGCTGACTCGCCTCTTGGAAGAGCTCGAGGTGGAGAAGAAGATAGGAGAAGAACTGAACAAGAAGATGAAGGAGATGGAGACTGATTTCTGGTGGGCCCAACCTGTTGGGACTCTGAGTAAGGATCAGCTAGTGATCTATAAGGTGCGTCTGGAGGAGATGAAGAAGACAGTCTGGCGCCGAGCTGATCAGACTATGGCCTACCACATTGGTAATAATTCGTCTCAGTTCTTTGTGGGTGGCAGCTCCTCTTCCTCCTCCGGCGGCGGCTTCAAGATGCCTCCGCGGCCACCTGAAGCTCAGGTGTTTCCTCCTCCTCTCGTGCAGCCTCCGCCAGTACTTCTGCGGCAGCAACCTCCGGTGGTTCAGAATCCGATGATGTTCGATGGAAACATGATGATGATGTCTCCGCAGCAGCCGATGATGATGTCTCCACAGCCGCATCCTCCGCCGCCACCTGCACCCGAAGGATTCCAGCAGTATCAGAACATGGGAGAGAGCAGCGGAGAAGGATTCTTCTGA 861 0.5494 MSSSSNNGGGGRRSKGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVEVAIIVFSPGEKAYSFGHPSVDAVLDRFLNGGVPPMPPSASMQMMEAHRRAAVQELNAQLTRLLEELEVEKKIGEELNKKMKEMETDFWWAQPVGTLSKDQLVIYKVRLEEMKKTVWRRADQTMAYHIGNNSSQFFVGGSSSSSSGGGFKMPPRPPEAQVFPPPLVQPPPVLLRQQPPVVQNPMMFDGNMMMMSPQQPMMMSPQPHPPPPPAPEGFQQYQNMGESSGEGFF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2302 286 Gene3D - 27 88 IPR036879 GO:0003677|GO:0046983
Alju02g2302 286 Coils Coil 105 142 - -
Alju02g2302 286 Gene3D - 94 189 - -
Alju02g2302 286 MobiDBLite consensus disorder prediction 253 286 - -
Alju02g2302 286 MobiDBLite consensus disorder prediction 255 270 - -
Alju02g2302 286 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 FunFam Agamous-like MADS-box protein AGL62 27 91 - -
Alju02g2302 286 PANTHER MADS BOX PROTEIN 17 173 - -
Alju02g2302 286 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Alju02g2302 286 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Alju02g2302 286 CDD MADS_MEF2_like 18 86 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2302 Alju-ChrAlju02 23260849 23261709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2302 12 202 Type I MADS-box Gene Family AT5G60440 53.333 7.94e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju02g2302 SRF-TF 2.7e-25 No_clan