Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2261 ATGGCTTTGCAGGCTCTGAATTCTCCTTCTGCTACTCCCAATCCTGTGTTCAAAGACGACGACCTTCACTCCCTCGAGGCTTGGACCAAGGGCAAGCGATCTAAACGACCCCGTTTTGATCACAATTCGCCTTCCACTGAGGAAGAGTATCTCGCTATCTGCCTCCTCATGCTCGCTCACGGTGGTAACGTTAATCCCAATACGACGTCGTCTTCCTCCCCTGATCCTTCTCCGATGAAGCTCTCTCATAAGTGCTCTGTTTGTAACAAGTCCTTTCCCTCCTATCAAGCTCTCGGAGGACACAAGGCCAGCCACCGCAAGTCGTCTTCCTCCTCCGATCCTCAGCCTCCCGCCGACAATTCTTCCGCCTCCACCTCCACCGCCGCAGCTGGTGGCAGTGGCAAGCTGCACCAGTGCTCAATCTGTCACAAGGCTTTTCCGACCGGCCAGGCCCTCGGCGGACACAAGCGCTGCCACTATGACGGCGGCAACGCCAACAACAGCGGTACCGGTGGGACGACGGTGATCACTTCGTCTGAGGGGAACACCTCGTCGGTCACGCACAGCCACCGCGGGTTTGACCTGAACCTCCCTGCTCCTTTCACCGACTTCTCCCCGGCGGAGTTCGTTAGGGGCGCCGCGGCGGGGATGAGTGTGAAGATCGGAGAAGAAGAGGTGGAGAGCCCGTTACCGACGGCCGCCGCCAAGAAGCCTCGTTTGTTCATGGACGAAGAATGA 738 0.5813 MALQALNSPSATPNPVFKDDDLHSLEAWTKGKRSKRPRFDHNSPSTEEEYLAICLLMLAHGGNVNPNTTSSSSPDPSPMKLSHKCSVCNKSFPSYQALGGHKASHRKSSSSSDPQPPADNSSASTSTAAAGGSGKLHQCSICHKAFPTGQALGGHKRCHYDGGNANNSGTGGTTVITSSEGNTSSVTHSHRGFDLNLPAPFTDFSPAEFVRGAAAGMSVKIGEEEVESPLPTAAAKKPRLFMDEE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2261 245 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Alju02g2261 245 MobiDBLite consensus disorder prediction 1 20 - -
Alju02g2261 245 Gene3D Classic Zinc Finger 81 159 - -
Alju02g2261 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Alju02g2261 245 MobiDBLite consensus disorder prediction 97 130 - -
Alju02g2261 245 MobiDBLite consensus disorder prediction 103 130 - -
Alju02g2261 245 Pfam C2H2-type zinc finger 137 161 - -
Alju02g2261 245 Pfam C2H2-type zinc finger 83 107 - -
Alju02g2261 245 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Alju02g2261 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Alju02g2261 245 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 199 IPR044653 GO:0003700
Alju02g2261 245 SMART c2h2final6 83 105 IPR013087 -
Alju02g2261 245 SMART c2h2final6 137 159 IPR013087 -
Alju02g2261 245 MobiDBLite consensus disorder prediction 225 245 - -
Alju02g2261 245 SUPERFAMILY beta-beta-alpha zinc fingers 83 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2261 Alju-ChrAlju02 22338078 22338815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2261 1 240 C2H2 Transcription Factor Family AT1G27730 50.000 1.04e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g2261 zf-C2H2_6 4.5e-11 CL0361