Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2240 ATGTCACGCGCGACGTCCTCAAACGTCCAGCTCCGTGATCTTTCCGCCCATAACTCACCAAGAGGCCAGAGAAGCGTGTATGCTGATGCAATGAGTAAAAATATGGTTGATGTTTTGCATGAAGGGCATCAAACAGGTGGTGATCTTGTTGTTAATCCTAAAAAGGATGTTCTGTTGTATGAAGGGGACAGAGATTTTGAGCCACACAAGGGCATTGAATTTGATTCTCATGAATCAGCATATTCATTTTATCAAGAATATGCCAAATCTATGGGATTCACCACTTCAATAAAAAACAGCAGACGTTCAAAGAAAACTAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGATATGGATTTACACCTGAGTCAGATAGTGGGAGCAGCCGCAGGCCAAGTGTAAAGAAGACAGATTGCAAAGCCTGCATGCATGTGAAGAGAAGGTCAGATGGAAAGTGGATAATTCATGAATTCATAAAGGAGCATAATCATGAACTTCTACCAGCTTTGGCGTATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAAAAGAATAACATTGATATATTGCATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAAGCAATCCAGTGGCTGTCATAATTTTGGGTCTCTTCTCAGTGACGTAAATTGTCAGTTTGAAAGAGGCCAACATTTGGCTTTGGACGAGGGAGATGCTCGAGTTATTCTTGAGTATTTTAAGCACATTCAAAAGGAGAATCCTAACTTCTTTTATGCTATTGATTTGAATGAAGAACAACGATTGAGAAATTTGTTTTGGGTTGATGCAAAAAGTAGGAGTGATTATGTCATCTTTAATGATGTAGTTTCATTTGATACTTCTTATATCAAAAGCAACGATAAGTTACCATTTGCTCCTTTTGTTGGAGTGAACCATCACTGTCAGCCTATATTGCTTGGATGCGCATTGATTGCCGATGAGACTAAACCAACATTTGTTTGGTTGATGAAGACATGGCTTAGAGCAATGGGTGGGCAAGCTCCTAAAGTCATAATTACTGATCAAGACAAAGCCTTGAAGGCAGCAGCTGAAGAAGTCTTCCCAAATTCACGCCATTGCTTTTCTCTTTGGCACGTACTTGATAGGATACCTGAGAATCTTTCTATGGTGATAAAAAGGTATAAGAATTTCTTGCCAAAGTTTAACAAGTGCATATTTAAGTCTTGGACAGATGAAGAGTTTGACATGAGGTGGTGGAAAATGGTCACTAGATTTGAACTTCAGGATGACTTATGGTTTCAGTCTTTGTACGAAGACCGGAAAAAGTGGGTGCCTACTTATATGGGGGACACCTTTTTAGCTGGAATGTCTACTGCTCAACGTTCTGAAAGTATGAACTCTTTCTTTGACAAATACATTCATAAAAAAATTACGGTTAAAGAGTTTGTGAAACAGTATGGGACAATTCTTCAGAAAAGGCATGAAGAGGAAGCGATTGCAGATTTTGATACATTGCACAAACAGCCAGCACTCAAGTCTCCTTCTCCTTGGGAAAAACAAATGTCAACAGTTTATACGCATGCGATCTTCAAGAAATTCCAAGTTGAAGTTCTGGGTGTTGTTGGCTGTCATCCTAGGAGAGAAGGTGGAGATGGAACAATTGCGAAATTTGTAGTTCAAGATTGTGAGAAGGAGCAAGAGTTTTTGGTCACTTGGAATGAGATGAACTCAGAGGTTTCTTGCTTCTGTCGATTATTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAATGTTCTCCAACTTTGTGGCTGTTCAAGTATCCCATCTCACTACATTTTGAAAAGGTGGACCAAAGATGCAAAAAGTAGGGTATCAATGGTAGATGGAACTGAAAGGATTCAAACTAGGGTGCAACGTTATAACGATTTGTGTAAAAAAGCTATTGAATTGAGTGAAGAAGGATCCTCATCTGAAGAGAGTTATGATGTTGTTTTCCGTGCACTTGTTGATGCCCTGAAGAATTGTGTACATGTGAATAATTCTAACCACAATAATGCAGAAACCAGTAACAATGCTCTTGCCCGACGTGAAACAGAAGAAAATCAGGTTAACATTGCTACAAAAACAACTAAAAAGAGGACACCAGCTAAGAGAAGAAAGGCACAAATAGATACAGATATGATACTCGTCGATGCTCAAGATAGCCTGCAGCAAATGGATAACCTTAGCTCGGATGGAATGACCCTTAATGGATATTATGGCGCCCAGCAAAATGTGCAAGGACTGGTACAGTTGAACTTAATGGAGCCTCCTCATGATGGTTACTTTGTTAATCAACAGAGTATGCAAGGCCTTGGCCAATTGAATTCTATGACCTCGAGCCACGACGGGTTTTTCGGGACACAACAAAGCATTCATGGGCTGGGGCCATTGGAGTTTCGTCCGCCGACCACTTTTGGATATACCCTGCAGGATGATCCTGATCTGAGGTCTGCTCAGTTTCATGCCAGCAGTTCAAGAAATACATAG 2535 0.4008 MSRATSSNVQLRDLSAHNSPRGQRSVYADAMSKNMVDVLHEGHQTGGDLVVNPKKDVLLYEGDRDFEPHKGIEFDSHESAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGFTPESDSGSSRRPSVKKTDCKACMHVKRRSDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSKQSSGCHNFGSLLSDVNCQFERGQHLALDEGDARVILEYFKHIQKENPNFFYAIDLNEEQRLRNLFWVDAKSRSDYVIFNDVVSFDTSYIKSNDKLPFAPFVGVNHHCQPILLGCALIADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAAEEVFPNSRHCFSLWHVLDRIPENLSMVIKRYKNFLPKFNKCIFKSWTDEEFDMRWWKMVTRFELQDDLWFQSLYEDRKKWVPTYMGDTFLAGMSTAQRSESMNSFFDKYIHKKITVKEFVKQYGTILQKRHEEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVVGCHPRREGGDGTIAKFVVQDCEKEQEFLVTWNEMNSEVSCFCRLFEYKGFLCRHALNVLQLCGCSSIPSHYILKRWTKDAKSRVSMVDGTERIQTRVQRYNDLCKKAIELSEEGSSSEESYDVVFRALVDALKNCVHVNNSNHNNAETSNNALARRETEENQVNIATKTTKKRTPAKRRKAQIDTDMILVDAQDSLQQMDNLSSDGMTLNGYYGAQQNVQGLVQLNLMEPPHDGYFVNQQSMQGLGQLNSMTSSHDGFFGTQQSIHGLGPLEFRPPTTFGYTLQDDPDLRSAQFHASSSRNT 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2240 844 Pfam MULE transposase domain 289 381 IPR018289 -
Alju02g2240 844 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Alju02g2240 844 MobiDBLite consensus disorder prediction 1 22 - -
Alju02g2240 844 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 678 IPR031052 GO:0006355
Alju02g2240 844 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g2240 844 SMART 26again6 580 607 IPR006564 GO:0008270
Alju02g2240 844 Pfam FAR1 DNA-binding domain 82 169 IPR004330 -
Alju02g2240 844 Pfam SWIM zinc finger 578 604 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2240 Alju-ChrAlju02 22140119 22144742 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Alju02g2240 MULE 5.8e-24 CL0219