Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2160 ATGCAAGGTAACAGAAGGACTCTTGGGTCCTTTCCAGCAATTGTAAGTATGATGCAGGAGCCTAGTTCCAGTGGCACTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGATCCTCCAGTGACACTGCATGTTTACGCACTAGTGGTCCTAGTCCTAATGTTCAGAACTTCGATGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCACAGTCAAGTCAACAATGATGGGCTCAAAGCAGAACATGGTTGGTCTTCTTCATGTAGTGCTTCTACTGAGGATGTTCTCAGACCAGAAGTACAGCAATTTGATCCAAATAATGTAACTTTCCCTGGTAGCTTGAATACTGACTTACGTGTAAATCAATCCAGAGTTCGGCCTTTCTTCTTGCAAGGTTCCAGCTCCAATCATAGAACCCAGAACGCGGCTTTGAATATGGGTTCCATTGTCAGCCCCGCTAATCATGGGAAAGGAACAGAACCTTGTAGCAGTGATAGTATTCACAATACATATGGATTCAATAGTAAGCACACATCATTTGTTAGTGCTTCATGTGATCATATAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGGAGATAATGAAAATTCAAGCTCTTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGTCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTTTAGAAGCTGAAAACAGTTGCTGGTCTACTGGGACTCCTAATTCTAATATTGCTTCCAGCAGTTTACATGTGCCTAGACCTTCTGAGGATATTCCTAATACTAATCCTCCAGTAGAGCCGTACCCAAGAAATGAGATGAGGCAAATAGCTTCTGATGCATTCCCTTTGATTGGAGTTATGGGAAATGTGAACAGGCCTCTGACTCTGAGAGACTTTGATAGGAGAATCAATTATCCACAGCGACAGGAATCTAGGCATGCTAGTCATTCTTCTTCCCGCCAAACACCTACCTCTCACCCATTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTACAGCAGCCGATTCTAGTGCCCCTCAGTGTCAGTCACATGTTACGCACGTTTCTGGTTTGCCAGGGAACTTGCATCCCTTTCCTTGGAGTGGAGCTTCTAGTTCAAGAGGAGCCAGTTCATCAACTTCTTATAACTCTGCAGAAAGAGAACTTCGGGAAGAATTGAACTTAAGGATTTTTCCAAGGGACAATACCGAGCACCCCATCCTTGCACCTTCATCATCTGGACTTGACCCTACAAGTTGGCATATGTCATCTGGCAATGTGAACAATTCTGGAAGTGTACCTCCTGCACCTTGGATTGGATCCAGTTCAAGTGTCAATTCATTACCTACTCCAAGATGGGTTGTTCCCCATGAAGTTCCAACTCAGAGCCAGCAAAGATTATCAGAGTTCACTCCCTGGCCCCTTTTCCCTTCAATGAACTCAGTATCTGGTGTTCATAATGTTCATTCTGCCTCGTCTTCTACTTCTTCTGGTCCTCCTTCCTTTTCTCCAGACATGAGCAACCACCAATCATACCCAAGATTAGCGTCATTGATGGAGAGAAGAGGTGATGAAATTCTTAGTGCACCCCATTCATTGCGGGCTTTGGCTGTTGACATTGAGGGGAGACGCCGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGCTGGCACTGGAGGAGCGCATTGGAGACGTGAGCACCGGATTGAGCGAGGATACCATTATGAAGTTGATGAAACATCGGATCTTCTTGTCTGTCATGACTGAGTTTTCTACAGATCTGGAACCTTGTTGTATCTGTCAGGAGCAGTACGCGGATGGGGAGGATGTAGCCTCACTGGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACCACAGCCCTAGCAACATGA 2157 0.446 MQGNRRTLGSFPAIVSMMQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGSSSDTACLRTSGPSPNVQNFDGWNAGEPSSSVNLHSQVNNDGLKAEHGWSSSCSASTEDVLRPEVQQFDPNNVTFPGSLNTDLRVNQSRVRPFFLQGSSSNHRTQNAALNMGSIVSPANHGKGTEPCSSDSIHNTYGFNSKHTSFVSASCDHIGTSSGSSGYIVGGDNENSSSSLVNWGSSCKRKALESTSGQLCTGGSSSSFLEAENSCWSTGTPNSNIASSSLHVPRPSEDIPNTNPPVEPYPRNEMRQIASDAFPLIGVMGNVNRPLTLRDFDRRINYPQRQESRHASHSSSRQTPTSHPFNDSLELRLTAGVTAADSSAPQCQSHVTHVSGLPGNLHPFPWSGASSSRGASSSTSYNSAERELREELNLRIFPRDNTEHPILAPSSSGLDPTSWHMSSGNVNNSGSVPPAPWIGSSSSVNSLPTPRWVVPHEVPTQSQQRLSEFTPWPLFPSMNSVSGVHNVHSASSSTSSGPPSFSPDMSNHQSYPRLASLMERRGDEILSAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMKLMKHRIFLSVMTEFSTDLEPCCICQEQYADGEDVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALAT 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2160 718 ProSiteProfiles Zinc finger RING-type profile. 671 712 IPR001841 -
Alju02g2160 718 MobiDBLite consensus disorder prediction 515 538 - -
Alju02g2160 718 FunFam E3 ubiquitin-protein ligase MBR2 638 716 - -
Alju02g2160 718 MobiDBLite consensus disorder prediction 271 293 - -
Alju02g2160 718 Pfam Ring finger domain 671 712 IPR001841 -
Alju02g2160 718 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 228 716 IPR045191 GO:0061630
Alju02g2160 718 MobiDBLite consensus disorder prediction 333 355 - -
Alju02g2160 718 MobiDBLite consensus disorder prediction 439 463 - -
Alju02g2160 718 SMART ring_2 671 711 IPR001841 -
Alju02g2160 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 716 IPR013083 -
Alju02g2160 718 SUPERFAMILY RING/U-box 670 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2160 Alju-ChrAlju02 21061362 21065263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2160 18 718 C3H Transcription Factor Family AT2G15530 37.097 5.51e-114 358