Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2159 ATGTCTGCAGATAGAGAGAAAGAGAGGAAAAACCAGCCCAGTTATTCAGATAAAAACACCAAGAAGCTAACCATGAACCCACCACCTGAAAAGCATAATTACCCATCAAACATAAGAGTGAAGGAGAAGGGTGTTGGTACTTATAGTACTGATGAAATGGATACTGCTGAGAAGGAGAGGCGTCAGAAAATCAAATCTTTGTTTGCTGACCTTCATGCTATGCTCCCTCATGTTCCCCCTCAGGCAGACAAAGTAACAGTAGTGGATGAAACAATGAACTACATAAGAATATTGGAGCAAACTCTGAAAAACCTTGAAAAGAAGAAGCTTCAACGACTTCACTCTAATGCTGGAACTTCAAGAGAGGCCTTCATAGCTGAACATGTAGCTTCCTCCTCATCCACCTCAAATCCACATAATAACAATCAAAACCCAGAAGTAAAGTTCCAAACTTGGACTTCTCCGAATGTGGCAGTCAACATCTGTGGCCAAGAAGCTCAATTCAGTGTTTACTCCAACAAGAATAATCGCTGCCTCTTCACCAACATCTGCTCTGTTCTCGACAAGTACAAGATTGATGTTTTGTCTGCCCACATCTCATGTGACAATAATGGCAGGTTCTATATGTTTCAAGCTCAAGTGAACAAAGATTTGAATCGGCCTGCAGTGGCATTATCAGCAGAGGAAATATTCAAGCAAGCTGCTGCTGAAATTATTCAGTGTGTCTCTTAG 732 0.4139 MSADREKERKNQPSYSDKNTKKLTMNPPPEKHNYPSNIRVKEKGVGTYSTDEMDTAEKERRQKIKSLFADLHAMLPHVPPQADKVTVVDETMNYIRILEQTLKNLEKKKLQRLHSNAGTSREAFIAEHVASSSSTSNPHNNNQNPEVKFQTWTSPNVAVNICGQEAQFSVYSNKNNRCLFTNICSVLDKYKIDVLSAHISCDNNGRFYMFQAQVNKDLNRPAVALSAEEIFKQAAAEIIQCVS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2159 243 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 42 240 IPR044278 GO:0003700|GO:0006355|GO:0009960
Alju02g2159 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 109 IPR036638 GO:0046983
Alju02g2159 243 MobiDBLite consensus disorder prediction 1 58 - -
Alju02g2159 243 MobiDBLite consensus disorder prediction 1 16 - -
Alju02g2159 243 Gene3D - 52 119 IPR036638 GO:0046983
Alju02g2159 243 Coils Coil 88 108 - -
Alju02g2159 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Alju02g2159 243 CDD bHLH_AtbHLH_like 56 106 IPR045239 -
Alju02g2159 243 SMART finulus 54 104 IPR011598 GO:0046983
Alju02g2159 243 Pfam Helix-loop-helix DNA-binding domain 56 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2159 Alju-ChrAlju02 21057432 21058491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2159 57 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.628 1.20e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g2159 HLH 1.3e-06 No_clan