Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2158 ATGTCTTCTTCTGATGATCTCTCAAATTCATCAGATGTCACTGTGGAGAATTCCTTGAGAGGCATCAGCTCAGTTGATCGTCGTCGTCAATCTCATATCTCATTAGAGAGAAATCGAAGGAAGAAGATGAGACTCCATCTCAGAGAACTTCAAGATCTGGTCCCTTCTGTGAATCATATTAAGGCAGACAAGGCAACCATTGTTGAAGAAACTATCAAGTACATTAAAACCCTAGAACTCATTGTTGAAAAGTTGGAAAAAATGAAGAGAGAAAGAATCCTCCGATCTGCAGCCATGGCTATTTCACCAGTTCCACAAAACCCAATAGGGTTTCAAACTTGGGTTTTTCCAAATGTGGCAGTGTACATTTGTGGCGAAAAAGCTCAGTTTAGCATGTGCTTTCCTAAGAAGGAAGACCTCTACGGTGAAATCTGTTGTGTTCTTCACAAGTATAATATTCAGATTTTAGTTGTCAGCATCTCAACTAATAATTATAGAAGCACGTATAAGATTCATACACGTGCAAAAAATAGGCAGAATTCGGAAGAGGCATGTTCATTGGAGGAGACATTCAAGAAAGCGGCAAGAGACATTTATCTTCTCTCTCCTATGTGA 615 0.3935 MSSSDDLSNSSDVTVENSLRGISSVDRRRQSHISLERNRRKKMRLHLRELQDLVPSVNHIKADKATIVEETIKYIKTLELIVEKLEKMKRERILRSAAMAISPVPQNPIGFQTWVFPNVAVYICGEKAQFSMCFPKKEDLYGEICCVLHKYNIQILVVSISTNNYRSTYKIHTRAKNRQNSEEACSLEETFKKAARDIYLLSPM 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2158 204 Gene3D - 20 96 IPR036638 GO:0046983
Alju02g2158 204 CDD bHLH_AtbHLH_like 32 86 IPR045239 -
Alju02g2158 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 78 IPR011598 GO:0046983
Alju02g2158 204 SMART finulus 33 84 IPR011598 GO:0046983
Alju02g2158 204 Pfam Helix-loop-helix DNA-binding domain 28 79 IPR011598 GO:0046983
Alju02g2158 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 96 IPR036638 GO:0046983
Alju02g2158 204 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 25 200 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2158 Alju-ChrAlju02 21055065 21055999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2158 32 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 27.706 7.01e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g2158 HLH 9.4e-12 No_clan