Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2153 ATGCCTTTGAAACATTCTACGCAGGAACTTTTGAGAGGTGAAATGATGGAGACCCCAAATAGATCTACATCAACAGGGTCTTCAGACTCATCAGAACAGAAGGACAGAGATATAACTGAATCAAATTCAAATGCAAACCTGTCTTCATGTCCTTTAAACCAGCAACCTTTTAGTTCCTTGGATGGCCCAGTGGCTATACTTTGGGATATTGAAAGTTGTCCTGTTCCGAGTGATGTGCGCCCTGAAGATGTTGCTGGGAATGTAACAATGGCTTTGCGGGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAAGGTTGCCAAAGAACCGGTGTTAAACTCACCGATGTTCCCAGTGGAAGAAAAAATGCTGCTGACAAAGCTATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACCGGCCGCCTTCTTCTATAATGCTGATATCTGGAGATATTGATTTTGCTCCTGCACTTCATGTTCTTGGTCAACGGGGATATACTATAATTCTTGTCATCCCTCCTCAGGTGGGCATGTCAACTGCCCTTGGCAACGCGGATAAATTTGTGTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGCTTTGTGCCTCCCTCAAAGGCTCTAGCGCCACCTTATGTTGTTCCAACTGAGGTTGTTGCAGATCTGATGGGGTGCCATAACAATGGCAACTTTGATGGACAAAGTGAAGAAGCTATAGTTTATGGAGGAGGGATCTCACAGAACTACCATAAGTCTAAGTGTTGCCCATTTGCGTCACAATCTCTGTCTGATTATAAAAGTGATACATTGAATGCTTCATGCTTTCCAACGGCATTGAGGTCACATAGCCTTCCATCTCAGAAGAATGTTTCAGGAGGATCTATGGCTTCTTCTAGTGACCAAAATGAATGCCTATCGTGGGTACAACCTGGGGATTTGAATGATGTGAAGTGCCAGCTGGTAAAGTTGCTAGAATTTTCTGGAGGTTGTTTGCTTCTAGCTCAAGTTCTACCGGCGTATCAGAAACATTTTGGGAGGTCTCTCTCTCCATCTAAATATGGGGTACGCAAGTTAGTGGGCCTTTTCAAGAAAATGGGTGATCCATTTTACGTGGAAGGGAAAGGGCCTCGGGTATTTGTATATCTTCGAAACTGGAAAGTGTGCCCTTTATCTCAGGTGAGCAACGATAAGAAAGGAAAAGGGATTCAGGAAGAGAATGCAGGAATTGTGCATGCTTGTTACTCTGTAGATGAAGAAAGAATAGTCACAGAAGAACATGATATGAGAAGCAGCATAGAAAAGGTTCACCAAGGGAAAGCAGCCAGAGAAATTCATGAGCGAATTCTTGAGCAATTCAAGCATGAGCTGCAAGAGATTCTCGTAATTTATTCTTGTCCAATATTCATAGATTGTTTCGATGACATTTACCGGCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAGTTAGAGGACTTGTTTGAGAAGGTGAATGATGTGGTAGCATTGTATGAAGAACCAGTAAGCAAGAGGAAGTTCCTAGCTGCTGTGCATGGTTAG 1620 0.4358 MPLKHSTQELLRGEMMETPNRSTSTGSSDSSEQKDRDITESNSNANLSSCPLNQQPFSSLDGPVAILWDIESCPVPSDVRPEDVAGNVTMALRVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNRPPSSIMLISGDIDFAPALHVLGQRGYTIILVIPPQVGMSTALGNADKFVWDWPSIARGEGFVPPSKALAPPYVVPTEVVADLMGCHNNGNFDGQSEEAIVYGGGISQNYHKSKCCPFASQSLSDYKSDTLNASCFPTALRSHSLPSQKNVSGGSMASSSDQNECLSWVQPGDLNDVKCQLVKLLEFSGGCLLLAQVLPAYQKHFGRSLSPSKYGVRKLVGLFKKMGDPFYVEGKGPRVFVYLRNWKVCPLSQVSNDKKGKGIQEENAGIVHACYSVDEERIVTEEHDMRSSIEKVHQGKAAREIHERILEQFKHELQEILVIYSCPIFIDCFDDIYRLRYKKPLEYQRLGVDKLEDLFEKVNDVVALYEEPVSKRKFLAAVHG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2153 539 CDD LOTUS 329 398 - -
Alju02g2153 539 MobiDBLite consensus disorder prediction 1 52 - -
Alju02g2153 539 CDD LOTUS 465 521 - -
Alju02g2153 539 Gene3D - 459 531 IPR041966 -
Alju02g2153 539 Gene3D - 327 397 IPR041966 -
Alju02g2153 539 Pfam NYN domain 63 206 IPR021139 GO:0004540
Alju02g2153 539 Pfam OST-HTH/LOTUS domain 329 393 IPR025605 -
Alju02g2153 539 Pfam OST-HTH/LOTUS domain 465 525 IPR025605 -
Alju02g2153 539 ProSiteProfiles OST-type HTH domain profile. 464 538 IPR025605 -
Alju02g2153 539 CDD PIN_limkain_b1_N_like 63 189 - -
Alju02g2153 539 Gene3D - 90 207 - -
Alju02g2153 539 PANTHER LIMKAIN B LKAP 28 337 IPR024768 GO:0005777|GO:0010468
Alju02g2153 539 ProSiteProfiles OST-type HTH domain profile. 328 400 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2153 Alju-ChrAlju02 21006979 21008598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2153 60 247 C2H2 Transcription Factor Family AT5G61190 38.298 7.37e-28 116